RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1074407" and tax_phylum = "Acidobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1074407 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1465559 1465559 PRJNA1074407_P_NODE_99282_length_351_cov_1.075540_g95444_i0 PRJNA1074407 99282 351 1.07554 3.7751454 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 531 3.4899999999999992e-146   NTclustered gi|31789464|gb|AY281356.1| 171953 g95444 i0 94.017 213.267806267806 351 20 100 1 1 351 10633 10284 Uncultured Acidobacteria bacterium clone 41b15 genomic sequence blastn 74857 531 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
24416526 24416526 PRJNA1074407_P_NODE_82420_length_421_cov_2.181034_g78584_i0 PRJNA1074407 82420 421 2.181034 9.18215314 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 555 2.5299999999999996e-153   NTclustered gi|31789464|gb|AY281356.1| 171953 g78584 i0 92.987 141.627078384798 385 20 91 6 38 421 10938 11316 Uncultured Acidobacteria bacterium clone 41b15 genomic sequence blastn 59625 555 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
29215022 29215022 PRJNA1074407_P_NODE_127989_length_266_cov_1.523316_g124151_i0 PRJNA1074407 127989 266 1.523316 4.05202056 Holophagales bacterium 2478486 Bacteria Bacteria 145 1.91e-38   NR MCG8462661.1 2478486 g124151 i0 83.5 2.93233082706767 85 14 95.9 0 3 257 99 183 MCG8462661.1 insulinase family protein [Holophagales bacterium] diamond 780 145 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales     Holophagales bacterium
29404264 29404264 PRJNA1074407_P_NODE_120649_length_286_cov_0.924883_g116811_i0 PRJNA1074407 120649 286 0.924883 2.64516538 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 132 3.16e-38   NR HXW05813.1 2910147 g116811 i0 95.9 5.38111888111888 73 3 76.6 0 66 284 1 73 HXW05813.1 HU family DNA-binding protein [Vicinamibacterales bacterium] diamond 1539 132 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
31963914 31963914 PRJNA1074407_P_NODE_144038_length_242_cov_0.899408_g140200_i0 PRJNA1074407 144038 242 0.899408 2.17656736 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 62.8 1.27e-10   NR HVG72772.1 2910147 g140200 i0 37.3 0.929752066115702 75 46 91.7 1 231 10 4 78 HVG72772.1 PRC-barrel domain-containing protein [Vicinamibacterales bacterium] diamond 225 62.8 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
32249109 32249109 PRJNA1074407_P_NODE_143558_length_242_cov_0.899408_g139720_i0 PRJNA1074407 143558 242 0.899408 2.17656736 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 102 1.43e-23   NR HXG55980.1 2910147 g139720 i0 65 3.95454545454545 80 28 99.2 0 242 3 210 289 HXG55980.1 hypothetical protein [Vicinamibacterales bacterium] diamond 957 102 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;