RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1074407", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1074407 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18040927 18040927 PRJNA1074407_P_NODE_26375_length_1148_cov_1.741395_g23529_i0 PRJNA1074407 26375 1148 1.741395 19.9912146 Arcobacteraceae bacterium 2808971 Bacteria Bacteria 56.5 0.009   NTclustered gi|2621713474|emb|OY771505.1| 2808971 g23529 i0 94.444 0.0574912891986063 36 2 3 0 276 311 892100 892135 MAG: Arcobacteraceae bacterium isolate 2add6294-6f5d-422d-8d5e-cb49cf879a66 genome assembly, chromosome: 1 blastn 66 56.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae   Arcobacteraceae bacterium
27035793 27035793 PRJNA1074407_P_NODE_129242_length_263_cov_1.305263_g125404_i0 PRJNA1074407 129242 263 1.305263 3.43284169 Helicobacter sp. 218 Bacteria Bacteria 43.5 0.0216   NR MDE7317487.1 218 g125404 i0 48.7 0.444866920152091 39 19 43.3 1 165 52 20 58 MDE7317487.1 alpha/beta hydrolase [Helicobacter sp.] diamond 117 43.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;