RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1074407" and tax_clade = "PVC group"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA1074407 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9116258 9116258 PRJNA1074407_P_NODE_132228_length_256_cov_1.136612_g128390_i0 PRJNA1074407 132228 256 1.136612 2.90972672 Phycisphaerales bacterium 2052180 Bacteria Bacteria 56.5 0.002   NTclustered gi|2108078657|gb|CP070747.1| 2052180 g128390 i0 94.595 0.3046875 37 1 14 1 201 236 683114 683150 MAG: Phycisphaerales bacterium isolate bin358 chromosome blastn 78 56.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
11219942 11219942 PRJNA1074407_P_NODE_80989_length_428_cov_1.707042_g77153_i0 PRJNA1074407 80989 428 1.707042 7.30613976 Bacteria 2 Bacteria Bacteria 544 5.589999999999998e-150   NTclustered gi|2874254043|emb|OY970367.1| 120965 g77153 i0 90.215 152.953271028037 419 37 97 4 12 428 3454581 3454165 MAG: uncultured Planctomycetota bacterium isolate MFD04580.bin.c.2 genome assembly, chromosome: 1 blastn 65464 544 1 Bacteria PVC group Pseudomonadati Planctomycetota         uncultured Planctomycetota bacterium
28235716 28235716 PRJNA1074407_P_NODE_138186_length_247_cov_0.873563_g134348_i0 PRJNA1074407 138186 247 0.873563 2.15770061 Candidatus Anoxychlamydiales bacterium 2705072 Bacteria Bacteria 42.7 0.0388   NR NGX48595.1 2705072 g134348 i0 38 0.607287449392713 50 31 60.7 0 235 86 123 172 NGX48595.1 hypothetical protein [Candidatus Anoxychlamydiales bacterium] diamond 150 42.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Candidatus Anoxychlamydiales     Candidatus Anoxychlamydiales bacterium
29057023 29057023 PRJNA1074407_P_NODE_126308_length_271_cov_0.974747_g122470_i0 PRJNA1074407 126308 271 0.974747 2.64156437 Candidatus Chlamydia sanziniae 1806891 Bacteria Bacteria 43.9 0.02   NR WP_066482391.1 1806891 g122470 i0 30.6 0.686346863468635 62 43 68.6 0 12 197 416 477 WP_066482391.1 calcium-binding protein [Candidatus Chlamydia sanziniae] diamond 186 43.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Candidatus Chlamydia sanziniae
30920710 30920710 PRJNA1074407_P_NODE_88874_length_392_cov_0.890282_g85037_i0 PRJNA1074407 88874 392 0.890282 3.48990544 Planctomycetota bacterium 2026780 Bacteria Bacteria 45.1 0.0277   NR MFM1802915.1 2026780 g85037 i0 44.6 0.428571428571429 56 23 36.7 2 194 337 140 195 MFM1802915.1 hypothetical protein [Planctomycetota bacterium] diamond 168 45.1 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31078623 31078623 PRJNA1074407_P_NODE_116475_length_297_cov_1.017857_g112637_i0 PRJNA1074407 116475 297 1.017857 3.02303529 Planctomycetota bacterium 2026780 Bacteria Bacteria 99 1.25e-21   NR MDA3962851.1 2026780 g112637 i0 52.6 0.97979797979798 97 37 98 1 296 6 705 792 MDA3962851.1 ATP-dependent chaperone ClpB [Planctomycetota bacterium] diamond 291 99 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31900709 31900709 PRJNA1074407_P_NODE_116697_length_296_cov_1.363229_g112859_i0 PRJNA1074407 116697 296 1.363229 4.03515784 Candidatus Tritonobacter lacicola 3039765 Bacteria Bacteria 45.8 0.00528   NR MDP8249120.1 3039765 g112859 i0 35.2 0.547297297297297 54 35 54.7 0 278 117 251 304 MDP8249120.1 DUF58 domain-containing protein [Candidatus Tritonobacter lacicola] diamond 162 45.8 1 Bacteria PVC group Pseudomonadati Candidatus Auribacterota Candidatus Tritonobacteria Candidatus Tritonobacterales Candidatus Tritonobacteraceae Candidatus Tritonobacter Candidatus Tritonobacter lacicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;