RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1074407" and tax_clade = "Metamonada"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA1074407 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18039809 18039809 PRJNA1074407_P_NODE_105615_length_329_cov_2.367188_g101777_i0 PRJNA1074407 105615 329 2.367188 7.78804852 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 0.031   NTclustered gi|2806481420|ref|XM_068495248.1| 1144522 g101777 i0 100 0.0851063829787234 28 0 9 0 299 326 1002 975 Tritrichomonas foetus pre-mRNA splicing factor (TRFO_10116), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30383781 30383781 PRJNA1074407_P_NODE_114453_length_302_cov_1.991266_g110615_i0 PRJNA1074407 114453 302 1.991266 6.01362332 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 82.4 8.83e-16   NR KAJ5080720.1 1746090 g110615 i0 43.6 1.00331125827815 101 52 99.3 3 1 300 325 421 KAJ5080720.1 exosome RNA helicase mtr4 [Anaeramoeba ignava] diamond 303 82.4 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;