RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1073712" and tax_phylum = "Peploviricota"

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tax_superkingdom 1

tax_phylum 1

  • Peploviricota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1073712 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6565582 6565582 PRJNA1073712_P_NODE_3626_length_370_cov_17.185185_g3543_i0 PRJNA1073712 3626 370 17.185185 63.5851845 Lymphocryptovirus humangamma4 3050299 Viruses Viruses 527 4.7899999999999985e-145   NTclustered gi|731173911|dbj|AB828191.1| 10376 g3543 i0 100 79.1675675675676 285 0 77 0 86 370 93244 92960 Human herpesvirus 4 DNA, complete genome, strain: 1 LGY-Raji blastn 29292 527 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
11219618 11219618 PRJNA1073712_P_NODE_17429_length_199_cov_19.190476_g17346_i0 PRJNA1073712 17429 199 19.190476 38.18904724 Lymphocryptovirus 10375 Viruses Viruses 204 4.51e-48   NTclustered gi|1862917033|emb|LR812981.1| 10376 g17346 i0 100 55.2763819095477 110 0 55 0 1 110 6082 6191 Human gammaherpesvirus 4 isolate HC-0002 genome assembly, chromosome: EBV blastn 11000 204 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
15490262 15490262 PRJNA1073712_P_NODE_9193_length_269_cov_53.984694_g9110_i0 PRJNA1073712 9193 269 53.984694 145.21882686 Lymphocryptovirus humangamma4 3050299 Viruses Viruses 331 2.8300000000000002e-86   NTclustered gi|731173911|dbj|AB828191.1| 10376 g9110 i0 100 68.5910780669145 179 0 67 0 1 179 35537 35715 Human herpesvirus 4 DNA, complete genome, strain: 1 LGY-Raji blastn 18451 331 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
16764454 16764454 PRJNA1073712_P_NODE_11034_length_251_cov_15.331461_g10951_i0 PRJNA1073712 11034 251 15.331461 38.48196711 Lymphocryptovirus humangamma4 3050299 Viruses Viruses 237 5.85e-58   NTclustered gi|330439|gb|M26282.1|HS4T1PP 10376 g10951 i0 100 62.00796812749 128 0 51 0 24 151 649 776 Epstein-Barr virus Ir1/U2 region protein T1 mRNA, 3' end blastn 15564 237 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
17594010 17594010 PRJNA1073712_P_NODE_7794_length_284_cov_47.232227_g7711_i0 PRJNA1073712 7794 284 47.232227 134.13952468 Lymphocryptovirus 10375 Viruses Viruses 279 1.1e-70   NTclustered gi|1862917033|emb|LR812981.1| 10376 g7711 i0 100 54.3838028169014 151 0 53 0 134 284 6549 6399 Human gammaherpesvirus 4 isolate HC-0002 genome assembly, chromosome: EBV blastn 15445 279 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
18867775 18867775 PRJNA1073712_P_NODE_3255_length_384_cov_220.299035_g3172_i0 PRJNA1073712 3255 384 220.299035 845.9482944 Lymphocryptovirus 10375 Viruses Viruses 473 6.6e-129   NTclustered gi|1862857967|emb|LR812925.1| 10376 g3172 i0 100 83.3333333333333 256 0 83 0 1 256 14995 15250 Human gammaherpesvirus 4 isolate eBL_CL-01 genome assembly, chromosome: EBV blastn 32000 473 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
21864385 21864385 PRJNA1073712_P_NODE_14938_length_244_cov_1.263158_g14855_i0 PRJNA1073712 14938 244 1.263158 3.08210552 Lymphocryptovirus humangamma4 3050299 Viruses Viruses 427 3.13e-115   NTclustered gi|764007519|emb|LN824205.1| 10376 g14855 i0 99.573 95.5286885245902 234 1 96 0 1 234 80962 81195 Human herpesvirus 4 genome assembly sLCL-1.12, segment : I blastn 23309 427 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;