RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1073712" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1073712 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27888558 27888558 PRJNA1073712_P_NODE_13165_length_247_cov_1.741379_g13082_i0 PRJNA1073712 13165 247 1.741379 4.30120613 Longimicrobium sp. 2029185 Bacteria Bacteria 68.9 1.99e-11   NR HEX8433399.1 2029185 g13082 i0 55.1 0.838056680161943 69 29 81.4 1 215 15 188 256 HEX8433399.1 DUF2382 domain-containing protein [Longimicrobium sp.] diamond 207 68.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29309445 29309445 PRJNA1073712_P_NODE_10489_length_257_cov_1.440217_g10406_i0 PRJNA1073712 10489 257 1.440217 3.70135769 Longimicrobium sp. 2029185 Bacteria Bacteria 82 1.62e-16   NR HEX2210215.1 2029185 g10406 i0 55.4 1.94941634241245 83 36 95.7 1 256 11 166 248 HEX2210215.1 DUF2382 domain-containing protein [Longimicrobium sp.] diamond 501 82 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29372672 29372672 PRJNA1073712_P_NODE_5889_length_314_cov_1.278008_g5806_i0 PRJNA1073712 5889 314 1.278008 4.01294512 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 77.4 2.9e-14   NR HEX7243755.1 3047548 g5806 i0 47.1 1.97770700636943 104 50 96.5 3 312 10 199 300 HEX7243755.1 DUF2382 domain-containing protein [Longimicrobiaceae bacterium] diamond 621 77.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
31109885 31109885 PRJNA1073712_P_NODE_3735_length_366_cov_3.764505_g3652_i0 PRJNA1073712 3735 366 3.764505 13.7780883 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 61.2 2.92e-8   NR MBW3572569.1 2026742 g3652 i0 59.3 1.32786885245902 54 22 44.3 0 5 166 204 257 MBW3572569.1 DUF2382 domain-containing protein [Gemmatimonadota bacterium] diamond 486 61.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;