RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1073712", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1073712 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3566851 3566851 PRJNA1073712_P_NODE_8463_length_277_cov_1.509804_g8380_i0 PRJNA1073712 8463 277 1.509804 4.18215708 Campylobacter 194 Bacteria Bacteria 451 2.15e-122   NTclustered gi|1935888393|gb|CP049239.1| 199 g8380 i0 96.029 238.70036101083 277 11 100 0 1 277 1032106 1032382 Campylobacter concisus strain P3UCO1 chromosome, complete genome blastn 66120 451 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
5290362 5290362 PRJNA1073712_P_NODE_12565_length_249_cov_0.875000_g12482_i0 PRJNA1073712 12565 249 0.875 2.17875 Campylobacter gracilis 824 Bacteria Bacteria 370 5.48e-98   NTclustered gi|909717139|gb|CP012196.1| 824 g12482 i0 94.215 1.90763052208835 242 14 97 0 8 249 1177134 1177375 Campylobacter gracilis strain ATCC 33236, complete genome blastn 475 370 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter gracilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;