RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA1073712", tax_kingdom = "Orthornavirae" and tax_phylum = "Kitrinoviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 10 ✖

tax_kingdom 1

  • Orthornavirae · 10 ✖

bioproject 1

  • PRJNA1073712 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
187571 187571 PRJNA1073712_P_NODE_15301_length_244_cov_0.900585_g15218_i0 PRJNA1073712 15301 244 0.900585 2.1974274 Closterovirus tristezae 3428013 Viruses Viruses 412 8.759999999999998e-111   NTclustered gi|2553988738|gb|OQ708956.1| 12162 g15218 i0 97.51 80.7008196721311 241 6 99 0 4 244 1889 1649 Citrus tristeza virus isolate S45-1, complete genome blastn 19691 412 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae Closterovirus Closterovirus tristezae
2738195 2738195 PRJNA1073712_P_NODE_2723_length_406_cov_2.297297_g2640_i0 PRJNA1073712 2723 406 2.297297 9.32702582 Citrivirus citri 3427970 Viruses Viruses 451 3.2900000000000003e-122   NTclustered gi|2507214483|gb|OP971103.1| 129141 g2640 i0 86.849 2.92857142857143 403 53 99 0 4 406 4009 3607 Citrus leaf blotch virus isolate MA, complete genome blastn 1189 451 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Citrivirus Citrivirus citri
11666260 11666260 PRJNA1073712_P_NODE_16430_length_242_cov_0.911243_g16347_i0 PRJNA1073712 16430 242 0.911243 2.20520806 Citrivirus citri 3427970 Viruses Viruses 158 4.49e-34   NTclustered gi|2507214483|gb|OP971103.1| 129141 g16347 i0 82.955 0.727272727272727 176 28 72 2 66 240 2541 2715 Citrus leaf blotch virus isolate MA, complete genome blastn 176 158 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Citrivirus Citrivirus citri
12941297 12941297 PRJNA1073712_P_NODE_111_length_1455_cov_2.489870_g80_i0 PRJNA1073712 111 1455 2.48987 36.2276085 Citrivirus citri 3427970 Viruses Viruses 1378 0   NTclustered gi|2294430151|dbj|LC717799.1| 129141 g80 i0 83.847 41.254295532646 1461 222 99 13 2 1455 6504 7957 Citrus leaf blotch virus LM1 RNA, complete genome blastn 60025 1378 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Citrivirus Citrivirus citri
23139896 23139896 PRJNA1073712_P_NODE_13839_length_246_cov_0.890173_g13756_i0 PRJNA1073712 13839 246 0.890173 2.18982558 Potexvirus citriflavivenae 3433772 Viruses Viruses 455 1.4500000000000002e-123   NTclustered gi|2646511262|gb|OQ418499.1| 1214459 g13756 i0 100 87.3373983739837 246 0 100 0 1 246 257 12 Citrus yellow vein clearing virus isolate CA14, complete genome blastn 21485 455 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus citriflavivenae
23139958 23139958 PRJNA1073712_P_NODE_6519_length_303_cov_1.339130_g6436_i0 PRJNA1073712 6519 303 1.33913 4.0575639 Citrivirus citri 3427970 Viruses Viruses 381 3.169999999999999e-101   NTclustered gi|2626085630|gb|OR855671.1| 129141 g6436 i0 89.404 5.96369636963696 302 32 99 0 2 303 6175 5874 Citrus leaf blotch virus isolate CLBV-SD, complete genome blastn 1807 381 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Citrivirus Citrivirus citri
23139965 23139965 PRJNA1073712_P_NODE_7599_length_287_cov_1.200935_g7516_i0 PRJNA1073712 7599 287 1.200935 3.44668345 Citrivirus citri 3427970 Viruses Viruses 377 3.85e-100   NTclustered gi|2626085630|gb|OR855671.1| 129141 g7516 i0 90.526 25.7247386759582 285 27 99 0 3 287 5579 5863 Citrus leaf blotch virus isolate CLBV-SD, complete genome blastn 7383 377 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Citrivirus Citrivirus citri
27098978 27098978 PRJNA1073712_P_NODE_4062_length_356_cov_1.632509_g3979_i0 PRJNA1073712 4062 356 1.632509 5.81173204 Citrus leaf blotch virus 129141 Viruses Viruses 230 9.96e-73   NR NP_624334.1 129141 g3979 i0 99.2 2.98314606741573 118 1 99.4 0 356 3 75 192 NP_624334.1 movement protein [Citrus leaf blotch virus] diamond 1062 230 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Citrivirus Citrivirus citri
27920176 27920176 PRJNA1073712_P_NODE_2205_length_437_cov_2.417582_g2122_i0 PRJNA1073712 2205 437 2.417582 10.56483334 Citrus leaf blotch virus 129141 Viruses Viruses 297 2.67e-90   NR WHN55394.1 129141 g2122 i0 97.2 4.97711670480549 145 4 99.5 0 436 2 269 413 WHN55394.1 polyprotein [Citrus leaf blotch virus] diamond 2175 297 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Citrivirus Citrivirus citri
28299053 28299053 PRJNA1073712_P_NODE_3346_length_381_cov_1.402597_g3263_i0 PRJNA1073712 3346 381 1.402597 5.34389457 Citrus leaf blotch virus 129141 Viruses Viruses 241 5.44e-71   NR WHN55394.1 129141 g3263 i0 92.1 4.96062992125984 126 10 99.2 0 379 2 925 1050 WHN55394.1 polyprotein [Citrus leaf blotch virus] diamond 1890 241 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Citrivirus Citrivirus citri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;