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contig_metadata

19 rows where bioproject = "PRJNA1073712" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 19 ✖

bioproject 1

  • PRJNA1073712 · 19 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
187549 187549 PRJNA1073712_P_NODE_13041_length_248_cov_0.880000_g12958_i0 PRJNA1073712 13041 248 0.88 2.1824 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 453 5.2600000000000005e-123   NTclustered gi|1276720946|gb|CP024705.1| 2663009 g12958 i0 99.597 99.8588709677419 248 1 100 0 1 248 1394309 1394062 Fusobacterium pseudoperiodonticum strain KCOM 2653 chromosome, complete genome blastn 24765 453 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
4014085 4014085 PRJNA1073712_P_NODE_7564_length_287_cov_1.677570_g7481_i0 PRJNA1073712 7564 287 1.67757 4.8146259 Fusobacterium polymorphum 76857 Bacteria Bacteria 529 1.01e-145   NTclustered gi|2706071841|gb|CP077111.1| 76857 g7481 i0 100 466.560975609756 286 0 99 0 1 286 2465405 2465120 Fusobacterium polymorphum strain KCOM1275 chromosome, complete genome blastn 133903 529 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
7840272 7840272 PRJNA1073712_P_NODE_7467_length_288_cov_2.032558_g7384_i0 PRJNA1073712 7467 288 2.032558 5.85376704 Leptotrichia sp. oral taxon 498 712368 Bacteria Bacteria 494 3.68e-135   NTclustered gi|1227268105|gb|CP016753.1| 712368 g7384 i0 97.578 398.038194444444 289 5 100 2 1 288 593348 593635 Leptotrichia sp. oral taxon 498, complete genome blastn 114635 494 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 498
8669367 8669367 PRJNA1073712_P_NODE_16387_length_242_cov_0.911243_g16304_i0 PRJNA1073712 16387 242 0.911243 2.20520806 Fusobacterium 848 Bacteria Bacteria 448 2.3799999999999995e-121   NTclustered gi|2704983719|gb|CP077132.1| 851 g16304 i0 100 100.01652892562 242 0 100 0 1 242 1895048 1895289 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 24204 448 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
10390855 10390855 PRJNA1073712_P_NODE_14449_length_245_cov_0.895349_g14366_i0 PRJNA1073712 14449 245 0.895349 2.19360505 Leptotrichia sp. HMT-225 3058373 Bacteria Bacteria 448 2.41e-121   NTclustered gi|2557559843|gb|CP130323.1| 3058373 g14366 i0 99.592 16.5020408163265 245 1 100 0 1 245 715968 715724 Leptotrichia sp. HMT-225 chromosome, complete genome blastn 4043 448 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. HMT-225
10390857 10390857 PRJNA1073712_P_NODE_14629_length_245_cov_0.895349_g14546_i0 PRJNA1073712 14629 245 0.895349 2.19360505 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 442 1.1199999999999994e-119   NTclustered gi|922689899|gb|CP012410.1| 712357 g14546 i0 99.184 1 245 2 100 0 1 245 1927585 1927829 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 245 442 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
11666222 11666222 PRJNA1073712_P_NODE_13090_length_248_cov_0.880000_g13007_i0 PRJNA1073712 13090 248 0.88 2.1824 Fusobacterium massiliense 1852365 Bacteria Bacteria 157 2.15e-43   NR WP_074016534.1 1852365 g13007 i0 98.8 0.991935483870968 82 1 99.2 0 1 246 210 291 WP_074016534.1 biosynthetic-type acetolactate synthase large subunit [Fusobacterium massiliense] diamond 246 157 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium massiliense
12941350 12941350 PRJNA1073712_P_NODE_15431_length_243_cov_1.794118_g15348_i0 PRJNA1073712 15431 243 1.794118 4.35970674 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 438 1.4399999999999996e-118   NTclustered gi|1276709865|gb|CP024700.1| 2663009 g15348 i0 99.177 99.3827160493827 243 2 100 0 1 243 293465 293707 Fusobacterium pseudoperiodonticum strain KCOM 1263 chromosome, complete genome blastn 24150 438 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
15043807 15043807 PRJNA1073712_P_NODE_12652_length_248_cov_1.360000_g12569_i0 PRJNA1073712 12652 248 1.36 3.3728 Fusobacterium 848 Bacteria Bacteria 453 5.2600000000000005e-123   NTclustered gi|2704983719|gb|CP077132.1| 851 g12569 i0 99.597 100 248 1 100 0 1 248 79793 79546 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 24800 453 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
15490141 15490141 PRJNA1073712_P_NODE_10693_length_255_cov_1.467033_g10610_i0 PRJNA1073712 10693 255 1.467033 3.74093415 Fusobacterium nucleatum 851 Bacteria Bacteria 472 1.5e-128   NTclustered gi|2705009267|gb|CP084119.1| 851 g10610 i0 100 209.321568627451 255 0 100 0 1 255 2297826 2297572 Fusobacterium nucleatum strain KCOM1801 chromosome, complete genome blastn 53377 472 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
18039243 18039243 PRJNA1073712_P_NODE_14415_length_245_cov_0.895349_g14332_i0 PRJNA1073712 14415 245 0.895349 2.19360505 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 392 1.15e-104   NTclustered gi|922689899|gb|CP012410.1| 712357 g14332 i0 95.51 2.1265306122449 245 11 100 0 1 245 640406 640650 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 521 392 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
18867749 18867749 PRJNA1073712_P_NODE_15135_length_244_cov_0.900585_g15052_i0 PRJNA1073712 15135 244 0.900585 2.1974274 Fusobacterium 848 Bacteria Bacteria 451 1.86e-122   NTclustered gi|2704983719|gb|CP077132.1| 851 g15052 i0 100 99.8319672131148 244 0 100 0 1 244 1592833 1592590 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 24359 451 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
19313321 19313321 PRJNA1073712_P_NODE_17036_length_241_cov_0.916667_g16953_i0 PRJNA1073712 17036 241 0.916667 2.20916747 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 446 8.519999999999999e-121   NTclustered gi|1276712381|gb|CP024701.1| 2663009 g16953 i0 100 99.1244813278008 241 0 100 0 1 241 2167477 2167237 Fusobacterium pseudoperiodonticum strain KCOM 1277 chromosome, complete genome blastn 23889 446 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
21864440 21864440 PRJNA1073712_P_NODE_4858_length_336_cov_1.049430_g4775_i0 PRJNA1073712 4858 336 1.04943 3.5260848 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 621 1.9299999999999997e-173   NTclustered gi|1276705688|gb|CP024698.1| 2663009 g4775 i0 100 483.892857142857 336 0 100 0 1 336 509842 509507 Fusobacterium pseudoperiodonticum strain KCOM 1283 chromosome, complete genome blastn 162588 621 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
21864470 21864470 PRJNA1073712_P_NODE_9678_length_265_cov_1.484375_g9595_i0 PRJNA1073712 9678 265 1.484375 3.93359375 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 379 9.78e-101   NTclustered gi|922689899|gb|CP012410.1| 712357 g9595 i0 92.453 1 265 20 100 0 1 265 1719670 1719406 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 265 379 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
22693087 22693087 PRJNA1073712_P_NODE_13958_length_246_cov_0.890173_g13875_i0 PRJNA1073712 13958 246 0.890173 2.18982558 Fusobacterium 848 Bacteria Bacteria 292 1.2e-74   NTclustered gi|958162200|gb|CP013331.1| 1307442 g13875 i0 88.525 98.1463414634146 244 24 98 3 1 242 87914 88155 Fusobacterium hwasookii ChDC F174, complete genome blastn 24144 292 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hwasookii
22693104 22693104 PRJNA1073712_P_NODE_15778_length_243_cov_0.905882_g15695_i0 PRJNA1073712 15778 243 0.905882 2.20129326 root 1 Root_unresolved Root_unresolved 444 3.09e-120   NTclustered gi|2704944210|gb|CP077182.1| 851 g15695 i0 99.588 25.7160493827161 243 1 100 0 1 243 730197 729955 Fusobacterium nucleatum strain SB032 chromosome, complete genome blastn 6249 444 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
23968579 23968579 PRJNA1073712_P_NODE_15879_length_243_cov_0.905882_g15796_i0 PRJNA1073712 15879 243 0.905882 2.20129326 Fusobacterium 848 Bacteria Bacteria 449 6.65e-122   NTclustered gi|1208657894|gb|CP021934.1| 76857 g15796 i0 100 62.9547325102881 243 0 100 0 1 243 1386192 1386434 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1260 (=ChDC F218) genome blastn 15298 449 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
24413492 24413492 PRJNA1073712_P_NODE_14600_length_245_cov_0.895349_g14517_i0 PRJNA1073712 14600 245 0.895349 2.19360505 Fusobacterium nucleatum 851 Bacteria Bacteria 185 2.09e-42   NTclustered gi|1370533788|gb|CP028109.1| 525283 g14517 i0 90.141 14.5959183673469 142 14 58 0 104 245 314179 314320 Fusobacterium nucleatum subsp. nucleatum ATCC 23726 chromosome, complete genome blastn 3576 185 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;