RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

24 rows where bioproject = "PRJNA1073712", tax_clade = "Sar" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 24 ✖

tax_clade 1

  • Sar · 24 ✖

bioproject 1

  • PRJNA1073712 · 24 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1462185 1462185 PRJNA1073712_P_NODE_8222_length_280_cov_1.304348_g8139_i0 PRJNA1073712 8222 280 1.304348 3.6521744 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 305 1.79e-78   NTclustered gi|829196136|ref|XM_001025866.3| 312017 g8139 i0 87.547 0.946428571428571 265 31 94 2 17 280 510 247 Tetrahymena thermophila SB210 translationally-controlled tumor-like protein partial mRNA blastn 265 305 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
2291519 2291519 PRJNA1073712_P_NODE_14742_length_245_cov_0.895349_g14659_i0 PRJNA1073712 14742 245 0.895349 2.19360505 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 403 5.299999999999998e-108   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g14659 i0 96.327 68.9795918367347 245 9 100 0 1 245 214 458 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 16900 403 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
2738179 2738179 PRJNA1073712_P_NODE_16463_length_242_cov_0.911243_g16380_i0 PRJNA1073712 16463 242 0.911243 2.20520806 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 193 1.23e-44   NTclustered gi|829185314|ref|XM_001031847.2| 312017 g16380 i0 92.537 0.553719008264463 134 10 55 0 109 242 720 587 Tetrahymena thermophila SB210 60S ribosomal protein L7 partial mRNA blastn 134 193 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
3566803 3566803 PRJNA1073712_P_NODE_4223_length_351_cov_1.158273_g4140_i0 PRJNA1073712 4223 351 1.158273 4.06553823 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 405 2.21e-108   NTclustered gi|3861467|emb|AJ012585.1| 5911 g4140 i0 88.788 5.51851851851852 330 37 94 0 11 340 3135 2806 Tetrahymena thermophila macronuclear gene encoding ribosomal protein L3, exons 1-2 blastn 1937 405 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
8669413 8669413 PRJNA1073712_P_NODE_6147_length_309_cov_1.889831_g6064_i0 PRJNA1073712 6147 309 1.889831 5.83957779 Caryotricha 500583 SAR_Eukaryotes SAR_Eukaryotes 195 4.53e-45   NTclustered gi|759083508|gb|KM222125.1| 1004043 g6064 i0 94.444 41.0453074433657 126 7 41 0 175 300 1281 1156 Caryotricha minuta voucher LWW07112802 large subunit ribosomal RNA gene, partial sequence blastn 12683 195 1 Eukaryota Sar   Ciliophora Spirotrichea Kiitrichida Kiitrichidae Caryotricha Caryotricha minuta
9944337 9944337 PRJNA1073712_P_NODE_13728_length_246_cov_1.554913_g13645_i0 PRJNA1073712 13728 246 1.554913 3.82508598 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 305 1.54e-78   NTclustered gi|315570322|tpg|BK007923.1| 5911 g13645 i0 89.024 2.99593495934959 246 27 100 0 1 246 183 428 TPA_exp: Tetrahymena thermophila 40S ribosomal protein rpS16e mRNA, complete cds blastn 737 305 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
11666188 11666188 PRJNA1073712_P_NODE_10570_length_256_cov_1.677596_g10487_i0 PRJNA1073712 10570 256 1.677596 4.29464576 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 98.6 1.14e-22   NR XP_001017127.3 312017 g10487 i0 80 1.40625 60 10 68 1 69 242 6 65 XP_001017127.3 40S ribosomal protein S2, putative [Tetrahymena thermophila SB210] diamond 360 99 0.995959595959596 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
11666264 11666264 PRJNA1073712_P_NODE_17030_length_241_cov_0.916667_g16947_i0 PRJNA1073712 17030 241 0.916667 2.20916747 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 211 3.38e-50   NTclustered gi|229594318|ref|XM_001030083.3| 312017 g16947 i0 84.404 0.904564315352697 218 31 90 3 4 219 217 1 Tetrahymena thermophila SB210 40S ribosomal protein S3 partial mRNA blastn 218 211 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
12941326 12941326 PRJNA1073712_P_NODE_13811_length_246_cov_0.890173_g13728_i0 PRJNA1073712 13811 246 0.890173 2.18982558 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 348 2.53e-91   NTclustered gi|829153590|ref|XM_001010934.3| 312017 g13728 i0 92.245 0.995934959349594 245 19 99 0 1 245 263 19 Tetrahymena thermophila SB210 transcription factor BTF3a partial mRNA blastn 245 348 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
16764585 16764585 PRJNA1073712_P_NODE_9814_length_264_cov_1.209424_g9731_i0 PRJNA1073712 9814 264 1.209424 3.19287936 Viridiplantae 33090 SAR_Eukaryotes SAR_Eukaryotes 130 6.24e-33   NR CAI2387699.1 5936 g9731 i0 81 12.6704545454545 79 15 89.8 0 26 262 191 269 CAI2387699.1 unnamed protein product [Moneuplotes crassus] diamond 3345 131 0.99236641221374 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Moneuplotes Moneuplotes crassus
18039323 18039323 PRJNA1073712_P_NODE_7615_length_287_cov_1.014019_g7532_i0 PRJNA1073712 7615 287 1.014019 2.91023453 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 270 6.7299999999999984e-68   NTclustered gi|829194699|ref|XM_001025224.3| 312017 g7532 i0 84.962 0.926829268292683 266 40 93 0 15 280 1 266 Tetrahymena thermophila SB210 S25 ribosomal protein partial mRNA blastn 266 270 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
19313276 19313276 PRJNA1073712_P_NODE_12836_length_248_cov_0.880000_g12753_i0 PRJNA1073712 12836 248 0.88 2.1824 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 259 1.23e-64   NTclustered gi|118385632|ref|XM_001025944.1| 312017 g12753 i0 85.484 1 248 36 100 0 1 248 666 419 Tetrahymena thermophila SB210 receptor of activated kinase C 1A, component of 40S small ribosomal subunit partial mRNA blastn 248 259 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
24413452 24413452 PRJNA1073712_P_NODE_11220_length_251_cov_0.865169_g11137_i0 PRJNA1073712 11220 251 0.865169 2.17157419 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 331 2.6100000000000006e-86   NTclustered gi|829164593|ref|XM_972055.3| 312017 g11137 i0 90.438 1 251 24 100 0 1 251 2131 2381 Tetrahymena thermophila SB210 cytoplasmic-like aconitate hydratase partial mRNA blastn 251 331 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
26814336 26814336 PRJNA1073712_P_NODE_8501_length_277_cov_1.186275_g8418_i0 PRJNA1073712 8501 277 1.186275 3.28598175 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 137 1.7399999999999997e-35   NR XP_001032943.1 312017 g8418 i0 79.3 0.888086642599278 82 17 88.8 0 255 10 354 435 XP_001032943.1 60S ribosomal export protein NMD3, putative [Tetrahymena thermophila SB210] diamond 246 137 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
26877817 26877817 PRJNA1073712_P_NODE_12561_length_249_cov_0.875000_g12478_i0 PRJNA1073712 12561 249 0.875 2.17875 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 52.4 1.17e-5   NR CAG9310866.1 1481888 g12478 i0 47.6 0.759036144578313 63 25 75.9 1 247 59 143 197 CAG9310866.1 unnamed protein product [Blepharisma stoltei] diamond 189 52.4 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
27090590 27090590 PRJNA1073712_P_NODE_12422_length_249_cov_0.875000_g12339_i0 PRJNA1073712 12422 249 0.875 2.17875 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 130 1.51e-36   NR CDW82785.1 5949 g12339 i0 72.8 6.85542168674699 81 22 97.6 0 243 1 21 101 CDW82785.1 40s ribosomal protein [Stylonychia lemnae] diamond 1707 130 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
29309446 29309446 PRJNA1073712_P_NODE_13089_length_248_cov_0.880000_g13006_i0 PRJNA1073712 13089 248 0.88 2.1824 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 142 5.26e-41   NR XP_001023402.1 312017 g13006 i0 82.7 0.979838709677419 81 14 98 0 247 5 41 121 XP_001023402.1 ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPase family protein [Tetrahymena thermophila SB210] diamond 243 142 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
30130238 30130238 PRJNA1073712_P_NODE_11892_length_250_cov_0.870056_g11809_i0 PRJNA1073712 11892 250 0.870056 2.17514 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 52.4 1.72e-5   NR CDW71704.1 5949 g11809 i0 36.1 0.996 83 45 98.4 3 247 2 3043 3118 CDW71704.1 ef hand family protein [Stylonychia lemnae] diamond 249 52.4 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
31109884 31109884 PRJNA1073712_P_NODE_16315_length_242_cov_0.911243_g16232_i0 PRJNA1073712 16315 242 0.911243 2.20520806 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 102 1.52e-25   NR XP_001017372.1 312017 g16232 i0 83.6 0.756198347107438 61 10 75.6 0 58 240 22 82 XP_001017372.1 60S ribosomal protein L24 [Tetrahymena thermophila SB210] diamond 183 102 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
32177151 32177151 PRJNA1073712_P_NODE_16918_length_241_cov_0.916667_g16835_i0 PRJNA1073712 16918 241 0.916667 2.20916747 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 79.7 3.26e-15   NR XP_001031431.3 312017 g16835 i0 60 1.2448132780083 50 20 62.2 0 215 66 55 104 XP_001031431.3 hypothetical protein TTHERM_00825630 [Tetrahymena thermophila SB210] diamond 300 79.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
32650884 32650884 PRJNA1073712_P_NODE_17360_length_226_cov_2.013072_g17277_i0 PRJNA1073712 17360 226 2.013072 4.54954272 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 114 2.68e-27   NR TNV87702.1 5974 g17277 i0 70.3 29.853982300885 74 22 98.2 0 225 4 684 757 TNV87702.1 hypothetical protein FGO68_gene9476 [Halteria grandinella] diamond 6747 114 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella
32690953 32690953 PRJNA1073712_P_NODE_7740_length_285_cov_1.452830_g7657_i0 PRJNA1073712 7740 285 1.45283 4.1405655 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 133 3.22e-35   NR KRX06508.1 266149 g7657 i0 66.3 1.87368421052632 89 30 93.7 0 3 269 85 173 KRX06508.1 ATP:guanido phosphotransferase, N-terminal [Pseudocohnilembus persalinus] diamond 534 133 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
32722645 32722645 PRJNA1073712_P_NODE_4600_length_341_cov_1.436567_g4517_i0 PRJNA1073712 4600 341 1.436567 4.89869347 Paramecium sonneborni 65129 SAR_Eukaryotes SAR_Eukaryotes 46.6 0.00535   NR CAD8120202.1 65129 g4517 i0 36.8 0.668621700879765 76 39 64.2 5 276 58 380 449 CAD8120202.1 unnamed protein product [Paramecium sonneborni] diamond 228 46.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium sonneborni
32848499 32848499 PRJNA1073712_P_NODE_9480_length_267_cov_1.458763_g9397_i0 PRJNA1073712 9480 267 1.458763 3.89489721 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 153 5.15e-43   NR KRX06508.1 266149 g9397 i0 85.2 3.86516853932584 88 13 98.9 0 266 3 280 367 KRX06508.1 ATP:guanido phosphotransferase, N-terminal [Pseudocohnilembus persalinus] diamond 1032 153 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;