RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1073712", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1073712 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7840244 7840244 PRJNA1073712_P_NODE_3527_length_374_cov_2.262458_g3444_i0 PRJNA1073712 3527 374 2.262458 8.46159292 uncultured Opitutia bacterium 575426 Bacteria Bacteria 689 0   NTclustered gi|523452328|gb|KF182748.1| 575426 g3444 i0 100 99.6390374331551 373 0 99 0 1 373 870 498 Uncultured Opitutae bacterium clone S1-003 16S ribosomal RNA gene, partial sequence blastn 37265 689 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       uncultured Opitutia bacterium
27636214 27636214 PRJNA1073712_P_NODE_1684_length_482_cov_1.555012_g1601_i0 PRJNA1073712 1684 482 1.555012 7.49515784 Puniceicoccales bacterium 2478473 Bacteria Bacteria 52.8 1.12e-4   NR MDR1434996.1 2478473 g1601 i0 32.8 1.5746887966805 125 70 73.4 5 369 16 90 207 MDR1434996.1 glycosyltransferase family 8 protein [Puniceicoccales bacterium] diamond 759 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales     Puniceicoccales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;