RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA1073712", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA1073712 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29341178 29341178 PRJNA1073712_P_NODE_15049_length_244_cov_0.900585_g14966_i0 PRJNA1073712 15049 244 0.900585 2.1974274 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 85.5 3.33e-17   NR XP_004341026.1 1257118 g14966 i0 51.4 1.77049180327869 72 34 87.3 1 32 244 371 442 XP_004341026.1 diphosphonucleotide phosphatase 1, putative [Acanthamoeba castellanii str. Neff] diamond 432 85.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29941217 29941217 PRJNA1073712_P_NODE_6631_length_301_cov_1.350877_g6548_i0 PRJNA1073712 6631 301 1.350877 4.06613977 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 103 5.410000000000001e-26   NR XP_004348720.1 1257118 g6548 i0 55.2 0.867109634551495 87 39 86.7 0 269 9 27 113 XP_004348720.1 actin binding protein [Acanthamoeba castellanii str. Neff] diamond 261 103 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30193675 30193675 PRJNA1073712_P_NODE_15132_length_244_cov_0.900585_g15049_i0 PRJNA1073712 15132 244 0.900585 2.1974274 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 51.6 2.73e-5   NR XP_004332832.1 1257118 g15049 i0 63.9 1.53688524590164 36 12 44.3 1 230 123 551 585 XP_004332832.1 Prokumamolisin, putative [Acanthamoeba castellanii str. Neff] diamond 375 51.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30794006 30794006 PRJNA1073712_P_NODE_8714_length_274_cov_2.293532_g8631_i0 PRJNA1073712 8714 274 2.293532 6.28427768 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 152 5.0599999999999985e-43   NR XP_004335307.1 1257118 g8631 i0 75.8 0.996350364963504 91 22 99.6 0 2 274 157 247 XP_004335307.1 sterol 24C-methyltransferase [Acanthamoeba castellanii str. Neff] diamond 273 152 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32090570 32090570 PRJNA1073712_P_NODE_8198_length_280_cov_1.487923_g8115_i0 PRJNA1073712 8198 280 1.487923 4.1661844 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 63.2 1.88e-9   NR XP_004340229.1 1257118 g8115 i0 47.3 2.74285714285714 91 40 92.1 3 258 1 1 88 XP_004340229.1 ribosomal protein L6e, putative [Acanthamoeba castellanii str. Neff] diamond 768 63.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;