RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1073183" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1073183 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11665871 11665871 PRJNA1073183_P_NODE_23650_length_268_cov_1.579487_g23555_i0 PRJNA1073183 23650 268 1.579487 4.23302516 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 54.7 0.007   NTclustered gi|1752376089|ref|XM_776583.5| 7668 g23555 i0 100 0.324626865671642 29 0 11 0 178 206 3174 3202 PREDICTED: Strongylocentrotus purpuratus mediator of RNA polymerase II transcription subunit 15 (LOC576259), transcript variant X1, mRNA blastn 87 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
23139681 23139681 PRJNA1073183_P_NODE_31879_length_244_cov_0.900585_g31784_i0 PRJNA1073183 31879 244 0.900585 2.1974274 Patiria miniata 46514 Echinodermata other_Eukaryota 52.8 0.022   NTclustered gi|1944928045|ref|XM_038219946.1| 46514 g31784 i0 100 0.114754098360656 28 0 11 0 102 129 268 295 PREDICTED: Patiria miniata UBX domain-containing protein 1-like (LOC119743524), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
26750477 26750477 PRJNA1073183_P_NODE_16861_length_319_cov_1.109756_g16766_i0 PRJNA1073183 16861 319 1.109756 3.54012164 Patiria miniata 46514 Echinodermata other_Eukaryota 137 8.85e-36   NR XP_038044202.1 46514 g16766 i0 61.9 1.97492163009404 105 40 98.7 0 317 3 283 387 XP_038044202.1 probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial [Patiria miniata] diamond 630 137 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
29309436 29309436 PRJNA1073183_P_NODE_21389_length_283_cov_1.466667_g21294_i0 PRJNA1073183 21389 283 1.466667 4.15066761 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 135 1.5199999999999996e-38   NR XP_041463361.1 7654 g21294 i0 67 3.97526501766784 94 31 99.6 0 282 1 4 97 XP_041463361.1 60S ribosomal protein L24-like [Lytechinus variegatus] diamond 1125 135 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
29647938 29647938 PRJNA1073183_P_NODE_25110_length_259_cov_1.365591_g25015_i0 PRJNA1073183 25110 259 1.365591 3.53688069 Metazoa 33208 Echinodermata other_Eukaryota 82 6.05e-17   NR NP_001091926.1 7668 g25015 i0 37.4 4.21621621621622 91 51 98.5 1 255 1 39 129 NP_001091926.1 eukaryotic translation initiation factor 4E family member 3 [Strongylocentrotus purpuratus] diamond 1092 82 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
30153433 30153433 PRJNA1073183_P_NODE_28732_length_248_cov_0.880000_g28637_i0 PRJNA1073183 28732 248 0.88 2.1824 Aspidochirotida 7682 Echinodermata other_Eukaryota 44.3 0.0111   NR KAJ8041092.1 206669 g28637 i0 33.3 1.66935483870968 69 41 77.4 1 39 230 207 275 KAJ8041092.1 Cuticle-degrading serine protease [Holothuria leucospilota] diamond 414 44.3 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
30572667 30572667 PRJNA1073183_P_NODE_19273_length_298_cov_1.026667_g19178_i0 PRJNA1073183 19273 298 1.026667 3.05946766 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 53.1 5.94e-6   NR XP_041460429.1 7654 g19178 i0 41.8 3.83557046979866 79 40 78.5 4 285 52 41 114 XP_041460429.1 translocon-associated protein subunit delta-like [Lytechinus variegatus] diamond 1143 53.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;