RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where bioproject = "PRJNA1073183", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 19 ✖

tax_phylum 1

  • Bdellovibrionota · 19 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1073183 · 19 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2737966 2737966 PRJNA1073183_P_NODE_33023_length_243_cov_0.905882_g32928_i0 PRJNA1073183 33023 243 0.905882 2.20129326 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 57 3.49e-8   NR MCM2283060.1 2026715 g32928 i0 96.6 0.358024691358025 29 1 35.8 0 1 87 86 114 MCM2283060.1 kinase/pyrophosphorylase [Pseudobdellovibrionaceae bacterium] diamond 87 57 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
18038975 18038975 PRJNA1073183_P_NODE_27235_length_250_cov_0.870056_g27140_i0 PRJNA1073183 27235 250 0.870056 2.17514 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 141 8.819999999999999e-37   NR MCM2282276.1 2026715 g27140 i0 80.7 5.976 83 16 99.6 0 1 249 254 336 MCM2282276.1 heavy metal translocating P-type ATPase [Pseudobdellovibrionaceae bacterium] diamond 1494 141 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
21863887 21863887 PRJNA1073183_P_NODE_13138_length_357_cov_2.154930_g13043_i0 PRJNA1073183 13138 357 2.15493 7.6931001 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 222 1.2e-68   NR MCB0368368.1 2053517 g13043 i0 91.5 0.991596638655462 118 10 99.2 0 356 3 257 374 MCB0368368.1 hypothetical protein [Bdellovibrionales bacterium] diamond 354 222 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
26655634 26655634 PRJNA1073183_P_NODE_25821_length_254_cov_1.469613_g25726_i0 PRJNA1073183 25821 254 1.469613 3.73281702 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 78.2 6.93e-15   NR MCB0369725.1 2053517 g25726 i0 81.3 1.13385826771654 48 9 56.7 0 147 4 10 57 MCB0369725.1 hypothetical protein [Bdellovibrionales bacterium] diamond 288 78.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27478180 27478180 PRJNA1073183_P_NODE_12743_length_363_cov_1.062069_g12648_i0 PRJNA1073183 12743 363 1.062069 3.85531047 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 134 7.27e-35   NR MCB0369454.1 2053517 g12648 i0 53.3 0.991735537190083 120 50 94.2 1 350 9 20 139 MCB0369454.1 hypothetical protein [Bdellovibrionales bacterium] diamond 360 134 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27762616 27762616 PRJNA1073183_P_NODE_14404_length_342_cov_2.089219_g14309_i0 PRJNA1073183 14404 342 2.089219 7.14512898 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 155 1.56e-46   NR MCB0370850.1 2053517 g14309 i0 67.5 1 114 36 100 1 1 342 3 115 MCB0370850.1 hypothetical protein [Bdellovibrionales bacterium] diamond 342 155 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27920162 27920162 PRJNA1073183_P_NODE_19705_length_294_cov_2.018100_g19610_i0 PRJNA1073183 19705 294 2.0181 5.933214 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 127 9.14e-33   NR MCB0369454.1 2053517 g19610 i0 59.8 0.989795918367347 97 39 99 0 3 293 141 237 MCB0369454.1 hypothetical protein [Bdellovibrionales bacterium] diamond 291 127 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29025655 29025655 PRJNA1073183_P_NODE_33608_length_242_cov_0.911243_g33513_i0 PRJNA1073183 33608 242 0.911243 2.20520806 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 144 5.9899999999999996e-43   NR MCB0368228.1 2053517 g33513 i0 92.5 0.991735537190083 80 6 99.2 0 241 2 9 88 MCB0368228.1 hypothetical protein [Bdellovibrionales bacterium] diamond 240 144 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29111697 29111697 PRJNA1073183_P_NODE_13768_length_350_cov_1.021661_g13673_i0 PRJNA1073183 13768 350 1.021661 3.5758135 Pseudomonadati 3379134 Bacteria Bacteria 118 1.15e-30   NR OFZ01981.1 1797385 g13673 i0 50.9 13.0971428571429 110 54 94.3 0 343 14 74 183 OFZ01981.1 MAG: NAD(P)H:quinone oxidoreductase, type IV [Bdellovibrionales bacterium GWB1_52_6] diamond 4584 119 0.991596638655462 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium GWB1_52_6
29561947 29561947 PRJNA1073183_P_NODE_27490_length_250_cov_0.870056_g27395_i0 PRJNA1073183 27490 250 0.870056 2.17514 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 142 1.07e-40   NR MCB0369154.1 2053517 g27395 i0 84.1 0.984 82 13 98.4 0 246 1 60 141 MCB0369154.1 C39 family peptidase [Bdellovibrionales bacterium] diamond 246 142 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29593265 29593265 PRJNA1073183_P_NODE_27010_length_251_cov_0.865169_g26915_i0 PRJNA1073183 27010 251 0.865169 2.17157419 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 148 1.43e-41   NR MES2965979.1 3034175 g26915 i0 89.2 1.9840637450199201 83 9 99.2 0 1 249 153 235 MES2965979.1 Holliday junction branch migration DNA helicase RuvB [Bdellovibrionota bacterium] diamond 498 148 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
29616447 29616447 PRJNA1073183_P_NODE_2510_length_782_cov_2.314528_g2431_i0 PRJNA1073183 2510 782 2.314528 18.09960896 Pseudomonadati 3379134 Bacteria Bacteria 209 2.8699999999999997e-62   NR PZQ44194.1 349221 g2431 i0 42.6 12.2340153452685 265 141 99.7 6 781 2 44 302 PZQ44194.1 MAG: hydroxyacid dehydrogenase [Micavibrio aeruginosavorus] diamond 9567 211 0.990521327014218 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
30193667 30193667 PRJNA1073183_P_NODE_23992_length_266_cov_1.595855_g23897_i0 PRJNA1073183 23992 266 1.595855 4.2449743 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 57.8 1.56e-8   NR MCB0368989.1 2053517 g23897 i0 61.9 0.473684210526316 42 16 47.4 0 133 258 1 42 MCB0368989.1 hypothetical protein [Bdellovibrionales bacterium] diamond 126 57.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31172891 31172891 PRJNA1073183_P_NODE_13775_length_350_cov_0.963899_g13680_i0 PRJNA1073183 13775 350 0.963899 3.3736465 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 192 3.91e-60   NR MBP9675022.1 2081706 g13680 i0 88.9 0.925714285714286 108 12 92.6 0 27 350 6 113 MBP9675022.1 EF-hand domain-containing protein [Bacteriovoracaceae bacterium] diamond 324 192 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
31489729 31489729 PRJNA1073183_P_NODE_11156_length_385_cov_1.961538_g11061_i0 PRJNA1073183 11156 385 1.961538 7.5519213 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 159 6.889999999999999e-47   NR MCB0369154.1 2053517 g11061 i0 65.6 1.02077922077922 131 34 98.2 5 378 1 4 128 MCB0369154.1 C39 family peptidase [Bdellovibrionales bacterium] diamond 393 159 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31616002 31616002 PRJNA1073183_P_NODE_13516_length_353_cov_1.100000_g13421_i0 PRJNA1073183 13516 353 1.1 3.883 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 180 2.1199999999999996e-55   NR MBP9675022.1 2081706 g13421 i0 90.7 0.824362606232295 97 9 82.4 0 62 352 16 112 MBP9675022.1 EF-hand domain-containing protein [Bacteriovoracaceae bacterium] diamond 291 180 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
31995666 31995666 PRJNA1073183_P_NODE_25398_length_257_cov_1.364130_g25303_i0 PRJNA1073183 25398 257 1.36413 3.5058141 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 87.8 6.110000000000001e-21   NR MCB0367907.1 2053517 g25303 i0 76.5 0.595330739299611 51 12 59.5 0 93 245 1 51 MCB0367907.1 hypothetical protein [Bdellovibrionales bacterium] diamond 153 87.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32185549 32185549 PRJNA1073183_P_NODE_22998_length_273_cov_1.155000_g22903_i0 PRJNA1073183 22998 273 1.155 3.15315 Halobacteriovorax marinus 97084 Bacteria Bacteria 137 2.64e-37   NR OUR94148.1 97084 g22903 i0 74.2 4.89010989010989 89 23 97.8 0 3 269 51 139 OUR94148.1 ribonucleoside-diphosphate reductase [Halobacteriovorax marinus] diamond 1335 137 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax marinus
32438839 32438839 PRJNA1073183_P_NODE_27419_length_250_cov_0.870056_g27324_i0 PRJNA1073183 27419 250 0.870056 2.17514 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 134 9.19e-38   NR MBP9675022.1 2081706 g27324 i0 85.5 0.912 76 11 91.2 0 229 2 6 81 MBP9675022.1 EF-hand domain-containing protein [Bacteriovoracaceae bacterium] diamond 228 134 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;