RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1073183", tax_kingdom = "Thermotogati" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA1073183 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3566717 3566717 PRJNA1073183_P_NODE_5243_length_554_cov_2.490644_g5150_i0 PRJNA1073183 5243 554 2.490644 13.79816776 root 1 Root_unresolved Root_unresolved 1013 0   NTclustered gi|155128|gb|J04639.1|TTHTAQP1A 271 g5150 i0 99.64 73.485559566787 555 1 100 1 1 554 1862 2416 Thermus aquaticus DNA polymerase (PolI) gene blastn 40711 1013 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
32902939 32902939 PRJNA1073183_P_NODE_27200_length_250_cov_0.870056_g27105_i0 PRJNA1073183 27200 250 0.870056 2.17514 Bacteria 2 Bacteria Bacteria 94.7 2.1e-20   NR MDQ3458137.1 1913990 g27105 i0 71 8.928 62 18 74.4 0 222 37 438 499 MDQ3458137.1 endopeptidase La [Deinococcota bacterium] diamond 2232 94.7 1 Bacteria   Thermotogati Deinococcota         Deinococcota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;