RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA1073183", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA1073183 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5290197 5290197 PRJNA1073183_P_NODE_33305_length_242_cov_1.331361_g33210_i0 PRJNA1073183 33305 242 1.331361 3.22189362 uncultured Desulfobulbus sp. 239745 Bacteria Bacteria 213 9.45e-51   NTclustered gi|2621704320|emb|OY760916.1| 239745 g33210 i0 82.996 494.404958677686 247 30 100 11 1 239 395122 395364 MAG: uncultured Desulfobulbus sp. isolate 7a05128d-adad-4d17-beb6-ff3d102eb21b genome assembly, chromosome: 1 blastn 119646 213 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus uncultured Desulfobulbus sp.
18867689 18867689 PRJNA1073183_P_NODE_32175_length_244_cov_0.900585_g32080_i0 PRJNA1073183 32175 244 0.900585 2.1974274 Desulfobulbaceae bacterium BRH_c16a 1629713 Bacteria Bacteria 98.2 3.52e-22   NR KJS02832.1 1629713 g32080 i0 64.3 1.7827868852459 70 25 86.1 0 217 8 5 74 KJS02832.1 MAG: hypothetical protein VR65_03850 [Desulfobulbaceae bacterium BRH_c16a] diamond 435 98.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae   Desulfobulbaceae bacterium BRH_c16a
26932389 26932389 PRJNA1073183_P_NODE_33722_length_242_cov_0.911243_g33627_i0 PRJNA1073183 33722 242 0.911243 2.20520806 root 1 Root_unresolved Root_unresolved 52 1.9e-5   NR MFO7556619.1 2044940 g33627 i0 54.9 2.65289256198347 51 19 59.5 2 163 20 147 196 MFO7556619.1 serine/threonine-protein kinase [Desulfobacterales bacterium] diamond 642 52 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
29941201 29941201 PRJNA1073183_P_NODE_27971_length_249_cov_0.875000_g27876_i0 PRJNA1073183 27971 249 0.875 2.17875 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 72.8 1.07e-12   NR HAO22905.1 2049433 g27876 i0 37 0.975903614457831 81 51 97.6 0 249 7 316 396 HAO22905.1 hypothetical protein [Desulfobacteraceae bacterium] diamond 243 72.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
31047151 31047151 PRJNA1073183_P_NODE_19015_length_300_cov_1.154185_g18920_i0 PRJNA1073183 19015 300 1.154185 3.462555 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 158 6.739999999999999e-43   NR MCP4117160.1 2049433 g18920 i0 90.1 0.91 91 9 91 0 28 300 1 91 MCP4117160.1 hypothetical protein [Desulfobacteraceae bacterium] diamond 273 158 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
32407022 32407022 PRJNA1073183_P_NODE_25879_length_254_cov_1.276243_g25784_i0 PRJNA1073183 25879 254 1.276243 3.24165722 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 66.6 2.28e-11   NR MCP4108409.1 2049433 g25784 i0 55.6 0.74409448818897606 63 25 70.9 1 1 180 109 171 MCP4108409.1 hypothetical protein [Desulfobacteraceae bacterium] diamond 189 66.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;