RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA1073183" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 6 ✖

bioproject 1

  • PRJNA1073183 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27257028 27257028 PRJNA1073183_P_NODE_27043_length_250_cov_1.683616_g26948_i0 PRJNA1073183 27043 250 1.683616 4.20904 Thermococcus kodakarensis 311400 Archaea Archaea 172 1.5799999999999998e-47   NR WP_011248956.1 311400 g26948 i0 100 4.98 83 0 99.6 0 1 249 140 222 WP_011248956.1 DNA polymerase [Thermococcus kodakarensis] diamond 1245 172 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus kodakarensis
27257029 27257029 PRJNA1073183_P_NODE_30063_length_247_cov_0.885057_g29968_i0 PRJNA1073183 30063 247 0.885057 2.18609079 Methanobacterium ferruginis 710191 Archaea Archaea 42.7 0.0391   NR WP_286242695.1 710191 g29968 i0 42.9 0.510121457489879 42 20 51 1 148 23 306 343 WP_286242695.1 ArnT family glycosyltransferase [Methanobacterium ferruginis] diamond 126 42.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium ferruginis
27446871 27446871 PRJNA1073183_P_NODE_34423_length_241_cov_0.916667_g34328_i0 PRJNA1073183 34423 241 0.916667 2.20916747 Methanobacteriota archaeon 2026739 Archaea Archaea 44.7 0.00295   NR RYE96059.1 2026739 g34328 i0 35.9 0.796680497925311 64 37 74.7 1 198 19 25 88 RYE96059.1 MAG: hypothetical protein EOO41_05020, partial [Methanobacteriota archaeon] diamond 192 44.7 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
27659356 27659356 PRJNA1073183_P_NODE_24384_length_264_cov_1.089005_g24289_i0 PRJNA1073183 24384 264 1.089005 2.8749732 root 1 Root_unresolved Root_unresolved 181 1.55e-50   NR WP_011248956.1 311400 g24289 i0 100 18 88 0 100 0 264 1 1567 1654 WP_011248956.1 DNA polymerase [Thermococcus kodakarensis] diamond 4752 181 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus kodakarensis
29490332 29490332 PRJNA1073183_P_NODE_30910_length_245_cov_1.627907_g30815_i0 PRJNA1073183 30910 245 1.627907 3.98837215 Methanomicrobiales 2191 Archaea Archaea 43.5 0.02   NR WP_346733691.1 90427 g30815 i0 42.2 2.15510204081633 64 29 73.5 2 22 201 219 278 WP_346733691.1 kelch repeat-containing protein [Methanoculleus sp.] diamond 528 43.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus sp.
32312346 32312346 PRJNA1073183_P_NODE_31659_length_244_cov_1.625731_g31564_i0 PRJNA1073183 31659 244 1.625731 3.96678364 Archaeoglobus sp. 1872626 Archaea Archaea 78.2 1.12e-14   NR MBO8181295.1 1872626 g31564 i0 44.7 1.04508196721311 85 42 98.4 1 3 242 95 179 MBO8181295.1 aspartate aminotransferase family protein [Archaeoglobus sp.] diamond 255 78.2 1 Archaea   Methanobacteriati Methanobacteriota Archaeoglobi Archaeoglobales Archaeoglobaceae Archaeoglobus Archaeoglobus sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;