RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1073183", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA1073183 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4013884 4013884 PRJNA1073183_P_NODE_5804_length_526_cov_1.653422_g5711_i0 PRJNA1073183 5804 526 1.653422 8.69699972 Dehalococcoidales bacterium 2026733 Bacteria Bacteria 222 1.96e-71   NR MDO9333994.1 2026733 g5711 i0 94.3 0.695817490494297 122 6 69 1 10 372 18 139 MDO9333994.1 30S ribosomal protein S4 [Dehalococcoidales bacterium] diamond 366 222 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales     Dehalococcoidales bacterium
28709746 28709746 PRJNA1073183_P_NODE_25727_length_255_cov_1.269231_g25632_i0 PRJNA1073183 25727 255 1.269231 3.23653905 Anaerolineales bacterium 2073117 Bacteria Bacteria 48.5 3.44e-4   NR MFN2300069.1 2073117 g25632 i0 37 0.952941176470588 81 35 87.1 4 25 246 128 199 MFN2300069.1 MerR family transcriptional regulator [Anaerolineales bacterium] diamond 243 48.5 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
32817019 32817019 PRJNA1073183_P_NODE_12000_length_373_cov_1.026667_g11905_i0 PRJNA1073183 12000 373 1.026667 3.82946791 Dehalococcoidales bacterium 2026733 Bacteria Bacteria 124 8.429999999999999e-31   NR MDO9333871.1 2026733 g11905 i0 58.3 0.828418230563003 103 41 81.2 1 5 307 104 206 MDO9333871.1 hypothetical protein [Dehalococcoidales bacterium] diamond 309 124 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales     Dehalococcoidales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;