RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1073183", tax_clade = "Sar" and tax_phylum = "Perkinsozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1073183 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10390353 10390353 PRJNA1073183_P_NODE_13829_length_349_cov_1.115942_g13734_i0 PRJNA1073183 13829 349 1.115942 3.89463758 Perkinsus 28000 SAR_Eukaryotes SAR_Eukaryotes 191 8.03e-54   NR KAF4658562.1 32597 g13734 i0 76.3 7.79656160458453 114 27 98 0 7 348 1000 1113 KAF4658562.1 hypothetical protein FOL46_006904 [Perkinsus olseni] diamond 2721 191 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
30288964 30288964 PRJNA1073183_P_NODE_25312_length_258_cov_1.037838_g25217_i0 PRJNA1073183 25312 258 1.037838 2.67762204 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 48.1 4.71e-4   NR XP_002784301.1 423536 g25217 i0 38.1 0.732558139534884 63 39 73.3 0 65 253 89 151 XP_002784301.1 U2 small nuclear ribonucleoprotein A', putative [Perkinsus marinus ATCC 50983] diamond 189 48.1 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
31047155 31047155 PRJNA1073183_P_NODE_24495_length_263_cov_1.215789_g24400_i0 PRJNA1073183 24495 263 1.215789 3.19752507 Perkinsus chesapeaki 330153 SAR_Eukaryotes SAR_Eukaryotes 122 3.31e-30   NR KAF4661482.1 330153 g24400 i0 70.1 7.09505703422053 77 23 87.8 0 1 231 676 752 KAF4661482.1 hypothetical protein FOL47_006647 [Perkinsus chesapeaki] diamond 1866 122 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus chesapeaki
31828718 31828718 PRJNA1073183_P_NODE_7137_length_476_cov_2.374690_g7043_i0 PRJNA1073183 7137 476 2.37469 11.3035244 Pelagophyceae 35675 SAR_Eukaryotes SAR_Eukaryotes 58.5 4.34e-7   NR KAF4732395.1 32597 g7043 i0 57.1 3.70588235294118 49 21 30.9 0 472 326 151 199 KAF4732395.1 60S ribosomal protein L7A, partial [Perkinsus olseni] diamond 1764 58.9 0.99320882852292 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;