RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1073183", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA1073183 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4013793 4013793 PRJNA1073183_P_NODE_3184_length_701_cov_1.805732_g3099_i0 PRJNA1073183 3184 701 1.805732 12.65818132 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 348 1.29e-117   NR RYD65414.1 2026800 g3099 i0 73.9 1.00142653352354 234 58 99.7 2 700 2 85 316 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 702 348 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
10390308 10390308 PRJNA1073183_P_NODE_10889_length_389_cov_2.066456_g10794_i0 PRJNA1073183 10889 389 2.066456 8.03851384 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 496 1.43e-135   NTclustered gi|226525339|gb|FJ872375.1| 156588 g10794 i0 91.831 155.804627249357 355 29 91 0 1 355 27824 27470 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 60608 496 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
21864238 21864238 PRJNA1073183_P_NODE_34298_length_241_cov_0.916667_g34203_i0 PRJNA1073183 34298 241 0.916667 2.20916747 Pseudomonadati 3379134 Bacteria Bacteria 117 1.9000000000000003e-28   NR MSU23997.1 1913982 g34203 i0 79.7 13.6680497925311 79 16 98.3 0 3 239 603 681 MSU23997.1 DUF1592 domain-containing protein [Opitutus sp.] diamond 3294 117 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp.
28678152 28678152 PRJNA1073183_P_NODE_2787_length_747_cov_1.158754_g2704_i0 PRJNA1073183 2787 747 1.158754 8.65589238 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 381 2.7799999999999993e-126   NR RYD77759.1 2026800 g2704 i0 78.4 0.983935742971888 245 53 98.4 0 737 3 161 405 RYD77759.1 MAG: hypothetical protein EOP84_15150, partial [Verrucomicrobiaceae bacterium] diamond 735 381 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
28795628 28795628 PRJNA1073183_P_NODE_26847_length_251_cov_0.865169_g26752_i0 PRJNA1073183 26847 251 0.865169 2.17157419 Bacteria 2 Bacteria Bacteria 76.6 3.47e-14   NR MFM1768708.1 2026799 g26752 i0 44.7 3.54980079681275 76 40 90.8 2 16 243 73 146 MFM1768708.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 891 76.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28898843 28898843 PRJNA1073183_P_NODE_12708_length_363_cov_1.327586_g12613_i0 PRJNA1073183 12708 363 1.327586 4.81913718 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 128 6.84e-33   NR RYD71398.1 2026800 g12613 i0 58.5 0.975206611570248 118 46 95 3 347 3 233 350 RYD71398.1 MAG: hypothetical protein EOP84_24945, partial [Verrucomicrobiaceae bacterium] diamond 354 128 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29246303 29246303 PRJNA1073183_P_NODE_24209_length_265_cov_1.203125_g24114_i0 PRJNA1073183 24209 265 1.203125 3.18828125 Opitutaceae bacterium 2006848 Bacteria Bacteria 43.1 0.0352   NR HXC01461.1 2006848 g24114 i0 33.7 0.973584905660377 86 44 82.6 3 22 240 371 456 HXC01461.1 methyltransferase domain-containing protein [Opitutaceae bacterium] diamond 258 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;