RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1073183", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1073183 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16764429 16764429 PRJNA1073183_P_NODE_8634_length_434_cov_1.673130_g8540_i0 PRJNA1073183 8634 434 1.67313 7.2613842 Chlamydiales bacterium 2047757 Bacteria Bacteria 242 8.820000000000001e-80   NR MCP5470421.1 2047757 g8540 i0 81.1 0.988479262672811 143 27 98.8 0 6 434 1 143 MCP5470421.1 hypothetical protein [Chlamydiales bacterium] diamond 429 242 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
26655638 26655638 PRJNA1073183_P_NODE_32101_length_244_cov_0.900585_g32006_i0 PRJNA1073183 32101 244 0.900585 2.1974274 Chlamydiales bacterium 2047757 Bacteria Bacteria 140 2.07e-40   NR MCP5470420.1 2047757 g32006 i0 80.2 0.995901639344262 81 16 99.6 0 1 243 2 82 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 243 140 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
28235688 28235688 PRJNA1073183_P_NODE_17366_length_314_cov_1.099585_g17271_i0 PRJNA1073183 17366 314 1.099585 3.4526969 Waddliaceae bacterium 2026802 Bacteria Bacteria 70.1 1.65e-11   NR HEY4831209.1 2026802 g17271 i0 45.3 1.39490445859873 86 45 80.3 1 1 252 267 352 HEY4831209.1 F0F1 ATP synthase subunit alpha [Waddliaceae bacterium] diamond 438 70.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae   Waddliaceae bacterium
32249085 32249085 PRJNA1073183_P_NODE_26358_length_251_cov_1.297753_g26263_i0 PRJNA1073183 26358 251 1.297753 3.25736003 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 102 8.989999999999998e-24   NR MBA3815054.1 2052176 g26263 i0 57.8 5.00796812749004 83 34 98 1 250 5 230 312 MBA3815054.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase [Parachlamydiaceae bacterium] diamond 1257 102 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;