RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1073183", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA1073183 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27920171 27920171 PRJNA1073183_P_NODE_33185_length_243_cov_0.864706_g33090_i0 PRJNA1073183 33185 243 0.864706 2.10123558 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 121 7.96e-32   NR XP_068363904.1 1144522 g33090 i0 74.7 4.88888888888889 79 20 97.5 0 239 3 75 153 XP_068363904.1 40S ribosomal protein S2-1 [Tritrichomonas foetus] diamond 1188 121 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32249091 32249091 PRJNA1073183_P_NODE_5118_length_560_cov_8.172485_g5025_i0 PRJNA1073183 5118 560 8.172485 45.765916 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 199 1.39e-61   NR XP_068360038.1 1144522 g5025 i0 57.2 7.45714285714286 173 74 92.7 0 532 14 5 177 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 4176 199 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;