RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1073183", tax_clade = "Metamonada" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 4 ✖

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJNA1073183 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27257034 27257034 PRJNA1073183_P_NODE_9543_length_414_cov_2.117302_g9449_i0 PRJNA1073183 9543 414 2.117302 8.76563028 Spironucleus salmonicida 348837 Fornicata other_Eukaryota 43.1 0.0276   NR XP_067762115.1 348837 g9449 i0 37.5 0.405797101449275 56 34 40.6 1 245 78 41 95 XP_067762115.1 Dynein light chain [Spironucleus salmonicida] diamond 168 43.1 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Spironucleus Spironucleus salmonicida
28520247 28520247 PRJNA1073183_P_NODE_33427_length_242_cov_0.911243_g33332_i0 PRJNA1073183 33427 242 0.911243 2.20520806 Giardia intestinalis 5741 Fornicata other_Eukaryota 45.4 0.00406   NR ESU38829.1 5741 g33332 i0 52.8 1.33884297520661 36 17 44.6 0 228 121 228 263 ESU38829.1 Variant-specific surface protein, partial [Giardia intestinalis] diamond 324 45.4 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
28646542 28646542 PRJNA1073183_P_NODE_22327_length_277_cov_1.509804_g22232_i0 PRJNA1073183 22327 277 1.509804 4.18215708 Giardia muris 5742 Fornicata other_Eukaryota 58.9 1.09e-7   NR TNJ28923.1 5742 g22232 i0 47.6 0.682310469314079 63 31 67.1 2 39 224 186 247 TNJ28923.1 High cysteine membrane protein [Giardia muris] diamond 189 58.9 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia muris
31584562 31584562 PRJNA1073183_P_NODE_22716_length_275_cov_1.133663_g22621_i0 PRJNA1073183 22716 275 1.133663 3.11757325 Giardia intestinalis ATCC 5 5741 Fornicata other_Eukaryota 55.1 2.12e-6   NR EET00465.1 598745 g22621 i0 33.7 1.00363636363636 92 49 94.9 3 262 2 179 263 EET00465.1 Cathepsin B precursor [Giardia intestinalis ATCC 50581] diamond 276 55.1 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;