RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1073183", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1073183 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14216113 14216113 PRJNA1073183_P_NODE_34752_length_235_cov_2.753086_g34657_i0 PRJNA1073183 34752 235 2.753086 6.4697521 FCB group 1783270 Bacteria Bacteria 102 5.22e-24   NR WP_170035086.1 1639882 g34657 i0 67.1 11.5021276595745 73 23 93.2 1 16 234 150 221 WP_170035086.1 NAD(P)-dependent alcohol dehydrogenase [Longimicrobium terrae] diamond 2703 102 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium terrae
16764199 16764199 PRJNA1073183_P_NODE_27954_length_249_cov_0.875000_g27859_i0 PRJNA1073183 27954 249 0.875 2.17875 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 300 7.29e-77   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g27859 i0 88.664 13.9036144578313 247 27 99 1 1 247 2075899 2076144 Gemmatimonas phototrophica strain AP64, complete genome blastn 3462 300 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
27983345 27983345 PRJNA1073183_P_NODE_27425_length_250_cov_0.870056_g27330_i0 PRJNA1073183 27425 250 0.870056 2.17514 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 49.3 1.91e-4   NR HJP56772.1 2448054 g27330 i0 54.3 1.104 46 21 55.2 0 3 140 433 478 HJP56772.1 DUF4388 domain-containing protein [Gemmatimonadales bacterium] diamond 276 49.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;