RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1073005" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1073005 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8669019 8669019 PRJNA1073005_P_NODE_10467_length_228_cov_3.451613_g10348_i0 PRJNA1073005 10467 228 3.451613 7.86967764 Desulfovibrio 872 Bacteria Bacteria 292 1.1e-74   NTclustered gi|763827875|gb|AY626029.2| 81425 g10348 i0 90.498 100.65350877193 221 21 97 0 1 221 221 1 Desulfovibrio aminophilus strain DSM 12254 dissimilatory (bi)sulfite reductase alpha subunit (dsrA) and dissimilatory (bi)sulfite reductase beta subunit (dsrB) genes, partial sequence blastn 22949 292 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio aminophilus
20588033 20588033 PRJNA1073005_P_NODE_10477_length_228_cov_2.683871_g10358_i0 PRJNA1073005 10477 228 2.683871 6.11922588 Bacteria 2 Bacteria Bacteria 154 1.75e-45   NR MBA4424199.1 48412 g10358 i0 85.3 5.92105263157895 75 11 98.7 0 2 226 59 133 MBA4424199.1 sulfite reductase, dissimilatory-type subunit alpha [Syntrophus sp. (in: bacteria)] diamond 1350 155 0.993548387096774 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae Syntrophus Syntrophus sp. (in: bacteria)
23139301 23139301 PRJNA1073005_P_NODE_7899_length_286_cov_1.276995_g7780_i0 PRJNA1073005 7899 286 1.276995 3.6522057 Thermosulfurimonas marina 2047767 Bacteria Bacteria 211 4.12e-50   NTclustered gi|1831559056|gb|CP042909.1| 2047767 g7780 i0 84.651 364.13986013986 215 29 75 4 1 214 1172339 1172550 Thermosulfurimonas marina strain SU872 chromosome, complete genome blastn 104144 211 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfobacteriaceae Thermosulfurimonas Thermosulfurimonas marina
24412875 24412875 PRJNA1073005_P_NODE_10480_length_228_cov_2.574194_g10361_i0 PRJNA1073005 10480 228 2.574194 5.86916232 Desulfobacterales bacterium 2044940 Bacteria Bacteria 195 3.19e-45   NTclustered gi|2108019731|gb|CP070768.1| 2044940 g10361 i0 83.105 72.7850877192982 219 31 95 5 7 222 1159062 1158847 MAG: Desulfobacterales bacterium isolate bin239 chromosome blastn 16595 195 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;