RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1073005" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1073005 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27098961 27098961 PRJNA1073005_P_NODE_8962_length_251_cov_0.865169_g8843_i0 PRJNA1073005 8962 251 0.865169 2.17157419 Halichondria panicea 6063 Porifera other_Eukaryota 64.3 9.05e-10   NR XP_064388481.1 6063 g8843 i0 44.7 1.01593625498008 85 45 99.2 2 250 2 3 87 XP_064388481.1 guanine nucleotide-binding protein subunit alpha-11-like [Halichondria panicea] diamond 255 64.3 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria panicea
29877959 29877959 PRJNA1073005_P_NODE_6671_length_339_cov_1.157895_g6552_i0 PRJNA1073005 6671 339 1.157895 3.92526405 Sycon ciliatum 27933 Porifera other_Eukaryota 72 5.54e-12   NR XP_065183542.1 27933 g6552 i0 37.6 6.19469026548673 117 66 98.2 3 335 3 27 142 XP_065183542.1 uncharacterized protein LOC135814358 [Sycon ciliatum] diamond 2100 72 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
30312166 30312166 PRJNA1073005_P_NODE_9252_length_249_cov_0.875000_g9133_i0 PRJNA1073005 9252 249 0.875 2.17875 Metazoa 33208 Porifera other_Eukaryota 148 2.63e-39   NR XP_062517554.1 121492 g9133 i0 84.3 163 83 13 100 0 1 249 598 680 XP_062517554.1 116 kDa U5 small nuclear ribonucleoprotein component-like [Corticium candelabrum] diamond 40587 149 0.993288590604027 Eukaryota Opisthokonta Metazoa Porifera Homoscleromorpha Homosclerophorida Plakinidae Corticium Corticium candelabrum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;