RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1073005", tax_phylum = "Planctomycetota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Planctomycetota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1073005 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7393710 7393710 PRJNA1073005_P_NODE_6706_length_338_cov_0.833962_g6587_i0 PRJNA1073005 6706 338 0.833962 2.81879156 Planctomycetia 203683 Bacteria Bacteria 176 1.02e-50   NR QGJ71590.1 2603660 g6587 i0 78.9 23.8934911242604 109 23 96.7 0 11 337 1 109 QGJ71590.1 Adenosylhomocysteinase [Planctomycetales bacterium 10988] diamond 8076 176 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales     Planctomycetales bacterium 10988
26963833 26963833 PRJNA1073005_P_NODE_8382_length_270_cov_1.172589_g8263_i0 PRJNA1073005 8382 270 1.172589 3.1659903 Planctomycetia 203683 Bacteria Bacteria 49.7 1.8e-4   NR MFM7518713.1 117 g8263 i0 42 3.91111111111111 88 47 96.7 2 262 2 243 327 MFM7518713.1 hypothetical protein [Pirellula sp.] diamond 1056 49.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Pirellula Pirellula sp.
26972389 26972389 PRJNA1073005_P_NODE_10182_length_242_cov_0.911243_g10063_i0 PRJNA1073005 10182 242 0.911243 2.20520806 Planctomycetota bacterium 2026780 Bacteria Bacteria 42.4 0.0441   NR NLK41141.1 2026780 g10063 i0 41 0.483471074380165 39 23 48.3 0 6 122 175 213 NLK41141.1 VanZ family protein [Planctomycetota bacterium] diamond 117 42.4 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
28701246 28701246 PRJNA1073005_P_NODE_9287_length_249_cov_0.875000_g9168_i0 PRJNA1073005 9287 249 0.875 2.17875 Thalassoglobus 2795865 Bacteria Bacteria 43.9 0.00606   NR MCY2989473.1 2026780 g9168 i0 72.7 1.85542168674699 22 6 26.5 0 184 249 2 23 MCY2989473.1 tryptophan-rich sensory protein [Planctomycetota bacterium] diamond 462 44.3 0.99097065462754 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;