RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1073005" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1073005 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15489612 15489612 PRJNA1073005_P_NODE_6093_length_366_cov_1.795222_g5974_i0 PRJNA1073005 6093 366 1.795222 6.57051252 Blastocladiella emersonii 4808 Fungi Fungi 230 1.4999999999999999e-55   NTclustered gi|117422539|gb|EF064246.1| 4808 g5974 i0 79.385 24.9672131147541 325 67 89 0 42 366 103 427 Blastocladiella emersonii elongation factor alpha-like protein mRNA, complete cds blastn 9138 230 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
15489617 15489617 PRJNA1073005_P_NODE_7473_length_303_cov_1.508696_g7354_i0 PRJNA1073005 7473 303 1.508696 4.57134888 Blastocladiella sp. 2169676 Fungi Fungi 243 1.56e-59   NTclustered gi|1866582610|gb|MT730785.1| 2169676 g7354 i0 85.837 64.4983498349835 233 28 76 4 74 303 3987 3757 Blastocladiella sp. isolate JEL0703 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19543 243 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;