RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1073005", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1073005 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30312167 30312167 PRJNA1073005_P_NODE_9512_length_247_cov_0.885057_g9393_i0 PRJNA1073005 9512 247 0.885057 2.18609079 Candidatus Solibacter 332162 Bacteria Bacteria 117 9.74e-29   NR MBI3472500.1 332163 g9393 i0 73.6 6.25506072874494 72 19 87.4 0 8 223 299 370 MBI3472500.1 PQQ-like beta-propeller repeat protein [Candidatus Solibacter usitatus] diamond 1545 118 0.991525423728814 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Solibacteraceae Candidatus Solibacter Candidatus Solibacter usitatus
31584558 31584558 PRJNA1073005_P_NODE_9576_length_247_cov_0.885057_g9457_i0 PRJNA1073005 9576 247 0.885057 2.18609079 Pseudacidobacterium ailaaui 1382359 Bacteria Bacteria 50.4 6.75e-5   NR WP_044933802.1 1382359 g9457 i0 68.6 0.425101214574899 35 11 42.5 0 3 107 230 264 WP_044933802.1 IS110 family transposase [Pseudacidobacterium ailaaui] diamond 105 50.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Pseudacidobacterium Pseudacidobacterium ailaaui

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;