RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1073005", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1073005 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30880338 30880338 PRJNA1073005_P_NODE_9174_length_249_cov_1.931818_g9055_i0 PRJNA1073005 9174 249 1.931818 4.81022682 Rhabditida 6236 Nematoda Nematoda 108 1.04e-26   NR VDK52909.1 6269 g9055 i0 73.3 9.24096385542169 75 20 90.4 0 16 240 1 75 VDK52909.1 unnamed protein product [Anisakis simplex] diamond 2301 109 0.990825688073395 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
31141246 31141246 PRJNA1073005_P_NODE_6875_length_329_cov_2.105469_g6756_i0 PRJNA1073005 6875 329 2.105469 6.92699301 Gongylonema pulchrum 637853 Nematoda Nematoda 142 5.03e-41   NR VDN42325.1 637853 g6756 i0 68.6 0.930091185410334 102 32 93 0 24 329 4 105 VDN42325.1 unnamed protein product [Gongylonema pulchrum] diamond 306 142 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gongylonematidae Gongylonema Gongylonema pulchrum
31805737 31805737 PRJNA1073005_P_NODE_8217_length_275_cov_1.287129_g8098_i0 PRJNA1073005 8217 275 1.287129 3.53960475 Mesorhabditis belari 2138241 Nematoda Nematoda 51.6 4.01e-5   NR CAJ0955719.1 2138241 g8098 i0 32.7 3.44727272727273 110 50 97.1 5 273 7 216 322 CAJ0955719.1 unnamed protein product, partial [Mesorhabditis belari] diamond 948 51.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis belari

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;