RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1073005", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1073005 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21863844 21863844 PRJNA1073005_P_NODE_8658_length_260_cov_1.235294_g8539_i0 PRJNA1073005 8658 260 1.235294 3.2117644 Asterias rubens 7604 Echinodermata other_Eukaryota 156 1.76e-33   NTclustered gi|1834268161|ref|XM_033789228.1| 7604 g8539 i0 83.951 4.24230769230769 162 26 62 0 96 257 55 216 PREDICTED: Asterias rubens ras-related protein Rab-10-like (LOC117304665), transcript variant X3, mRNA blastn 1103 156 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
28827179 28827179 PRJNA1073005_P_NODE_8888_length_252_cov_1.396648_g8769_i0 PRJNA1073005 8888 252 1.396648 3.51955296 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 80.5 2.15e-15   NR KAJ8027575.1 206669 g8769 i0 53.2 1.92857142857143 79 35 94 2 2 238 1083 1159 KAJ8027575.1 Activating signal cointegrator 1 complex subunit 3 [Holothuria leucospilota] diamond 486 80.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;