RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1073005", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA1073005 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27375345 27375345 PRJNA1073005_P_NODE_4803_length_440_cov_2.177112_g4684_i0 PRJNA1073005 4803 440 2.177112 9.5792928 Bacteria 2 Bacteria Bacteria 53.9 3.95e-5   NR NOZ70717.1 2026724 g4684 i0 41.4 2.12045454545455 99 54 66.8 3 370 77 60 155 NOZ70717.1 DUF11 domain-containing protein [Chloroflexota bacterium] diamond 933 53.9 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
29183373 29183373 PRJNA1073005_P_NODE_5809_length_380_cov_1.361564_g5690_i0 PRJNA1073005 5809 380 1.361564 5.1739432 Anaerolineales bacterium 2073117 Bacteria Bacteria 45.1 0.0277   NR MCB9436685.1 2073117 g5690 i0 36.8 0.75 95 56 73.4 2 42 320 28 120 MCB9436685.1 DUF11 domain-containing protein [Anaerolineales bacterium] diamond 285 45.1 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
29435477 29435477 PRJNA1073005_P_NODE_9450_length_248_cov_0.880000_g9331_i0 PRJNA1073005 9450 248 0.88 2.1824 Candidatus Limnocylindrales bacterium 2952938 Bacteria Bacteria 94.4 1.66e-20   NR HEX5149365.1 2952938 g9331 i0 59.5 0.955645161290323 79 32 95.6 0 241 5 4 82 HEX5149365.1 acetyl-CoA hydrolase/transferase C-terminal domain-containing protein [Candidatus Limnocylindrales bacterium] diamond 237 94.4 1 Bacteria   Bacillati Chloroflexota Candidatus Limnocylindria Candidatus Limnocylindrales     Candidatus Limnocylindrales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;