RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1073005", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA1073005 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12494678 12494678 PRJNA1073005_P_NODE_10490_length_228_cov_2.006452_g10371_i0 PRJNA1073005 10490 228 2.006452 4.57471056 Bacteria 2 Bacteria Bacteria 254 5.19e-63   NTclustered gi|2874253888|emb|OY970063.1| 34034 g10371 i0 88.208 65.6271929824561 212 25 93 0 11 222 1907044 1907255 MAG: uncultured delta proteobacterium isolate MFD10007.bin.1.119 genome assembly, chromosome: 1 blastn 14963 254 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
12940715 12940715 PRJNA1073005_P_NODE_10471_length_228_cov_3.064516_g10352_i0 PRJNA1073005 10471 228 3.064516 6.98709648 sulfate-reducing bacterium STC 153378 Bacteria Bacteria 353 4.98e-93   NTclustered gi|13898440|gb|AF327323.1| 153378 g10352 i0 96.279 46.1140350877193 215 8 94 0 7 221 215 1 Sulfate-reducing bacterium STC dissimilatory sulfite reductase alpha subunit (dsrA) gene, partial cds blastn 10514 353 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       sulfate-reducing bacterium STC

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;