RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA1073005" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 11 ✖

bioproject 1

  • PRJNA1073005 · 11 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1461549 1461549 PRJNA1073005_P_NODE_6182_length_362_cov_1.861592_g6063_i0 PRJNA1073005 6182 362 1.861592 6.73896304 Eukaryota 2759 Plants Plants 89.7 3.93e-18   NR PRW34006.1 3076 g6063 i0 69.6 1.1353591160221 69 21 57.2 0 326 120 179 247 PRW34006.1 60S acidic ribosomal P2 [Chlorella sorokiniana] diamond 411 89.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
2737555 2737555 PRJNA1073005_P_NODE_9523_length_247_cov_0.885057_g9404_i0 PRJNA1073005 9523 247 0.885057 2.18609079 Eukaryota 2759 Plants Plants 128 2.65e-32   NR KAJ9507100.1 44745 g9404 i0 80.2 5.89068825910931 81 16 98.4 0 1 243 809 889 KAJ9507100.1 hypothetical protein QJQ45_004733 [Haematococcus lacustris] diamond 1455 128 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
28741133 28741133 PRJNA1073005_P_NODE_7667_length_295_cov_1.387387_g7548_i0 PRJNA1073005 7667 295 1.387387 4.09279165 Symbiochloris irregularis 706552 Plants Plants 119 9.999999999999999e-33   NR KAK9808445.1 706552 g7548 i0 64.8 4.27118644067797 91 30 91.5 2 6 275 4 93 KAK9808445.1 hypothetical protein WJX73_006634 [Symbiochloris irregularis] diamond 1260 119 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Symbiochloris Symbiochloris irregularis
30604441 30604441 PRJNA1073005_P_NODE_10013_length_243_cov_1.341176_g9894_i0 PRJNA1073005 10013 243 1.341176 3.25905768 Pleodorina starrii 330485 Plants Plants 47.8 1.87e-4   NR GLC69858.1 330485 g9894 i0 41.7 2.18518518518519 60 30 67.9 1 241 77 75 134 GLC69858.1 hypothetical protein PLESTF_000888200 [Pleodorina starrii] diamond 531 47.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Pleodorina Pleodorina starrii
30627457 30627457 PRJNA1073005_P_NODE_10233_length_242_cov_0.911243_g10114_i0 PRJNA1073005 10233 242 0.911243 2.20520806 Coccomyxa 41891 Plants Plants 74.3 2.75e-13   NR KAK9906453.1 248742 g10114 i0 53.9 1.88429752066116 76 35 94.2 0 13 240 16 91 KAK9906453.1 hypothetical protein WJX75_002038 [Coccomyxa subellipsoidea] diamond 456 74.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
30880339 30880339 PRJNA1073005_P_NODE_9694_length_246_cov_0.890173_g9575_i0 PRJNA1073005 9694 246 0.890173 2.18982558 Chlorophyta 3041 Plants Plants 70.9 4.66e-12   NR GFR51519.1 47775 g9575 i0 50 3.89024390243902 80 39 96.3 1 3 239 96 175 GFR51519.1 hypothetical protein Agub_g13935 [Astrephomene gubernaculifera] diamond 957 71.2 0.995786516853933 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Astrephomenaceae Astrephomene Astrephomene gubernaculifera
30920662 30920662 PRJNA1073005_P_NODE_9474_length_247_cov_1.758621_g9355_i0 PRJNA1073005 9474 247 1.758621 4.34379387 Coccomyxa subellipsoidea C-169 574566 Plants Plants 120 2.29e-32   NR XP_005648580.1 574566 g9355 i0 76.5 0.983805668016194 81 19 98.4 0 245 3 48 128 XP_005648580.1 FAS1 domain-containing protein [Coccomyxa subellipsoidea C-169] diamond 243 120 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
31449467 31449467 PRJNA1073005_P_NODE_7076_length_320_cov_0.935223_g6957_i0 PRJNA1073005 7076 320 0.935223 2.9927136 Eukaryota 2759 Plants Plants 162 2.8e-45   NR GBF94375.1 307507 g6957 i0 71.2 21.4875 104 30 97.5 0 2 313 307 410 GBF94375.1 eukaryotic translation elongation factor 1 alpha [Raphidocelis subcapitata] diamond 6876 162 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Raphidocelis Raphidocelis subcapitata
32090545 32090545 PRJNA1073005_P_NODE_8818_length_254_cov_1.513812_g8699_i0 PRJNA1073005 8818 254 1.513812 3.84508248 Scenedesmus sp. PABB 2909984 Plants Plants 42.7 0.0435   NR KAF8062780.1 2742167 g8699 i0 58.8 0.401574803149606 34 12 40.2 1 150 251 503 534 KAF8062780.1 CDKC-1 [Scenedesmus sp. PABB004] diamond 102 42.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. PABB004
32249073 32249073 PRJNA1073005_P_NODE_9638_length_246_cov_0.890173_g9519_i0 PRJNA1073005 9638 246 0.890173 2.18982558 Coccomyxa subellipsoidea C-169 574566 Plants Plants 43.1 0.028   NR XP_005648211.1 574566 g9519 i0 50.6 0.939024390243902 77 31 93.9 4 244 14 108 177 XP_005648211.1 U-box-domain-containing protein [Coccomyxa subellipsoidea C-169] diamond 231 43.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
32588396 32588396 PRJNA1073005_P_NODE_2559_length_687_cov_1.350163_g2446_i0 PRJNA1073005 2559 687 1.350163 9.27561981 Micractinium 126838 Plants Plants 73.6 4.41e-11   NR KAL4435574.1 554058 g2446 i0 28.6 1.92139737991266 220 123 92.6 7 38 673 246 439 KAL4435574.1 hypothetical protein ABPG77_002537 [Micractinium sp. CCAP 211/92] diamond 1320 74.3 0.990578734858681 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium sp. CCAP 211/92

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;