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contig_metadata

4 rows where bioproject = "PRJNA1073005", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1073005 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2737545 2737545 PRJNA1073005_P_NODE_8703_length_259_cov_1.102151_g8584_i0 PRJNA1073005 8703 259 1.102151 2.85457109 Thraustotheca clavata 74557 SAR_Eukaryotes SAR_Eukaryotes 204 6.149999999999998e-48   NTclustered gi|59894163|gb|AY729864.1| 74557 g8584 i0 81.008 82.023166023166 258 47 99 2 3 259 1226 970 Thraustotheca clavata heat shock protein 90 gene, partial cds blastn 21244 204 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
23968396 23968396 PRJNA1073005_P_NODE_8119_length_279_cov_0.878641_g8000_i0 PRJNA1073005 8119 279 0.878641 2.45140839 Saprolegnia diclina VS2 112098 SAR_Eukaryotes SAR_Eukaryotes 158 1.6499999999999998e-42   NR XP_008610586.1 1156394 g8000 i0 81.3 6.8494623655914 91 17 97.8 0 6 278 1 91 XP_008610586.1 hypothetical protein SDRG_06578 [Saprolegnia diclina VS20] diamond 1911 158 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
28669654 28669654 PRJNA1073005_P_NODE_6367_length_353_cov_1.442857_g6248_i0 PRJNA1073005 6367 353 1.442857 5.09328521 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 60.5 3.62e-8   NR CAI5744820.1 86335 g6248 i0 35.4 2.88101983002833 113 54 92.6 4 351 25 14 111 CAI5744820.1 unnamed protein product [Peronospora destructor] diamond 1017 60.8 0.995065789473684 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora destructor
28962406 28962406 PRJNA1073005_P_NODE_10088_length_243_cov_0.905882_g9969_i0 PRJNA1073005 10088 243 0.905882 2.20129326 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 89.4 1.44e-18   NR XP_008861641.1 157072 g9969 i0 56.3 0.987654320987654 80 33 98.8 1 2 241 58 135 XP_008861641.1 hypothetical protein H310_00585 [Aphanomyces invadans] diamond 240 89.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;