RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1073005", tax_clade = "Bacteria candidate phyla" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1073005 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28457115 28457115 PRJNA1073005_P_NODE_8826_length_254_cov_1.276243_g8707_i0 PRJNA1073005 8826 254 1.276243 3.24165722 Candidatus Eiseniibacteriota bacterium 2212470 Bacteria Bacteria 62.4 5.14e-9   NR HXJ34712.1 2212470 g8707 i0 40 2.13779527559055 90 41 94.5 3 242 3 405 491 HXJ34712.1 di-heme oxidoredictase family protein [Candidatus Eiseniibacteriota bacterium] diamond 543 62.4 1 Bacteria Bacteria candidate phyla   Candidatus Eiseniibacteriota         Candidatus Eiseniibacteriota bacterium
28457116 28457116 PRJNA1073005_P_NODE_9086_length_250_cov_0.870056_g8967_i0 PRJNA1073005 9086 250 0.870056 2.17514 Candidatus Niyogibacteria bacterium 2750078 Bacteria Bacteria 44.7 0.00759   NR MBI5742705.1 2750078 g8967 i0 39.1 0.768 64 33 72 3 66 245 188 249 MBI5742705.1 TPM domain-containing protein [Candidatus Niyogibacteria bacterium] diamond 192 44.7 1 Bacteria Bacteria candidate phyla   Candidatus Niyogiibacteriota         Candidatus Niyogibacteria bacterium
30541284 30541284 PRJNA1073005_P_NODE_9553_length_247_cov_0.885057_g9434_i0 PRJNA1073005 9553 247 0.885057 2.18609079 Candidatus Woesebacteria bacterium 2026804 Bacteria Bacteria 119 1.5999999999999999e-29   NR MAG59263.1 2026804 g9434 i0 61 0.995951417004049 82 32 99.6 0 247 2 244 325 MAG59263.1 hypothetical protein [Candidatus Woesebacteria bacterium] diamond 246 119 1 Bacteria Bacteria candidate phyla   Candidatus Woeseibacteriota         Candidatus Woesebacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;