RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1073005" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA1073005 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28867413 28867413 PRJNA1073005_P_NODE_10288_length_241_cov_1.375000_g10169_i0 PRJNA1073005 10288 241 1.375 3.31375 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 116 2.35e-28   NR XP_013759182.1 461836 g10169 i0 77.6 0.83402489626556 67 15 83.4 0 236 36 290 356 XP_013759182.1 peptidase S8 and S53 domain-containing protein [Thecamonas trahens ATCC 50062] diamond 201 116 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30604442 30604442 PRJNA1073005_P_NODE_6393_length_352_cov_1.146953_g6274_i0 PRJNA1073005 6393 352 1.146953 4.03727456 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 79.7 3.77e-16   NR XP_013758370.1 461836 g6274 i0 39.3 0.997159090909091 117 63 95.5 3 17 352 20 133 XP_013758370.1 uncharacterized protein AMSG_04698 [Thecamonas trahens ATCC 50062] diamond 351 79.7 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30730874 30730874 PRJNA1073005_P_NODE_9074_length_250_cov_0.870056_g8955_i0 PRJNA1073005 9074 250 0.870056 2.17514 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 51.2 4.22e-5   NR XP_013758731.1 461836 g8955 i0 37.9 0.792 66 39 79.2 1 243 46 599 662 XP_013758731.1 uncharacterized protein AMSG_04390 [Thecamonas trahens ATCC 50062] diamond 198 51.2 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;