RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1073005", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 8 ✖

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA1073005 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
186983 186983 PRJNA1073005_P_NODE_3181_length_595_cov_6.808429_g3063_i0 PRJNA1073005 3181 595 6.808429 40.51015255 Ptolemeba bulliensis 1525729 Tubulinea other_Eukaryota 1029 0   NTclustered gi|667752759|gb|KJ542108.1| 1525729 g3063 i0 97.987 85.527731092437 596 6 100 3 1 595 1867 1277 Ptolemeba bulliensis isolate Sk13-4e 18S ribosomal RNA gene, partial sequence blastn 50889 1029 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Ptolemeba Ptolemeba bulliensis
1461544 1461544 PRJNA1073005_P_NODE_3022_length_615_cov_8.525830_g2904_i0 PRJNA1073005 3022 615 8.52583 52.4338545 Ptolemeba bulliensis 1525729 Tubulinea other_Eukaryota 1007 0   NTclustered gi|1255287465|dbj|LC272073.1| 1525729 g2904 i0 96.423 74.8439024390244 615 15 100 6 1 615 595 1202 Ptolemeba bulliensis gene for 18S ribosomal RNA, partial sequence, strain: BA02 blastn 46029 1007 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Ptolemeba Ptolemeba bulliensis
1461558 1461558 PRJNA1073005_P_NODE_8142_length_278_cov_1.126829_g8023_i0 PRJNA1073005 8142 278 1.126829 3.13258462 Arcella discoides 1078856 Tubulinea other_Eukaryota 279 1.08e-70   NTclustered gi|345452540|gb|JF694288.1| 1078856 g8023 i0 84.946 58.431654676259 279 38 99 4 2 278 642 366 Arcella discoides isolate DL3_98 clone 2 actin gene, partial cds blastn 16244 279 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella discoides
1461567 1461567 PRJNA1073005_P_NODE_9742_length_245_cov_1.872093_g9623_i0 PRJNA1073005 9742 245 1.872093 4.58662785 Amoeba proteus 5775 Tubulinea other_Eukaryota 154 2.2e-43   NR AAP88974.1 5775 g9623 i0 88.9 0.991836734693878 81 9 99.2 0 244 2 121 201 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 243 154 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
2737537 2737537 PRJNA1073005_P_NODE_7443_length_304_cov_2.095238_g7324_i0 PRJNA1073005 7443 304 2.095238 6.36952352 Amoeba leningradensis 160820 Tubulinea other_Eukaryota 305 1.97e-78   NTclustered gi|17897590|emb|AJ314605.1| 160820 g7324 i0 84.936 50.5460526315789 312 36 100 9 1 304 1294 1602 Amoeba leningradensis partial 16S rRNA gene, strain CCAP 1503/6 blastn 15366 305 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba leningradensis
11665626 11665626 PRJNA1073005_P_NODE_4310_length_478_cov_2.185185_g4191_i0 PRJNA1073005 4310 478 2.185185 10.4451843 Chaos nobile 160822 Tubulinea other_Eukaryota 499 1.38e-136   NTclustered gi|17902587|emb|AJ314606.1| 160822 g4191 i0 91.105 76.4644351464435 371 29 77 4 111 478 942 1311 Chaos nobile partial 16S rRNA gene, strain CCAP 1511/2 blastn 36550 499 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos nobile
19312652 19312652 PRJNA1073005_P_NODE_3456_length_563_cov_2.206122_g3337_i0 PRJNA1073005 3456 563 2.206122 12.42046686 Copromyxa protea 931554 Tubulinea other_Eukaryota 483 1.66e-131   NTclustered gi|508737347|dbj|AB766053.1| 931554 g3337 i0 81.9 4.101243339254 558 93 98 4 13 563 570 14 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 2309 483 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
28235682 28235682 PRJNA1073005_P_NODE_1806_length_837_cov_1.308901_g1710_i0 PRJNA1073005 1806 837 1.308901 10.95550137 Copromyxa protea 931554 Tubulinea other_Eukaryota 452 7.14e-156   NR BAN33737.1 931554 g1710 i0 79.9 0.96415770609319 269 51 95.3 1 2 799 198 466 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 807 452 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;