RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1072736" and tax_phylum = "Bacillota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1072736 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6118965 6118965 PRJNA1072736_S_NODE_4705_length_179_cov_2.477941_g4700_i0 PRJNA1072736 4705 179 2.477941 4.43551439 Clostridium 1485 Bacteria Bacteria 324 2.91e-84   NTclustered gi|1321427195|gb|CP013847.1| 1491 g4700 i0 100 772.329608938547 175 0 98 0 5 179 11883 12057 Clostridium botulinum strain Af650, complete sequence. blastn 138247 326 0.993865030674847 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum
8669014 8669014 PRJNA1072736_S_NODE_6347_length_161_cov_1.194915_g6342_i0 PRJNA1072736 6347 161 1.194915 1.92381315 Bacillales 1385 Bacteria Bacteria 298 1.56e-76   NTclustered gi|2482395019|gb|CP094927.1| 1280 g6342 i0 100 547.341614906832 161 0 100 0 1 161 1244553 1244713 Staphylococcus aureus strain 13 chromosome, complete genome blastn 88122 298 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus
14215640 14215640 PRJNA1072736_S_NODE_2712_length_218_cov_6.120000_g2707_i0 PRJNA1072736 2712 218 6.12 13.3416 Caloranaerobacter azorensis 116090 Bacteria Bacteria 54.7 0.005   NTclustered gi|1810187734|gb|CP048617.1| 116090 g2707 i0 100 0.13302752293578 29 0 13 0 133 161 1707613 1707585 Caloranaerobacter azorensis strain T3-1 chromosome, complete genome blastn 29 54.7 1 Bacteria   Bacillati Bacillota Tissierellia Tissierellales Thermohalobacteraceae Caloranaerobacter Caloranaerobacter azorensis
18867402 18867402 PRJNA1072736_S_NODE_3575_length_197_cov_2.298701_g3570_i0 PRJNA1072736 3575 197 2.298701 4.52844097 Staphylococcus 1279 Bacteria Bacteria 364 1.929999999999999e-96   NTclustered gi|1176884116|gb|CP020463.1| 1282 g3570 i0 100 100 197 0 100 0 1 197 1064189 1063993 Staphylococcus epidermidis strain 1457 chromosome, complete genome blastn 19700 364 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis
22692734 22692734 PRJNA1072736_S_NODE_3218_length_205_cov_2.370370_g3213_i0 PRJNA1072736 3218 205 2.37037 4.8592585 Paenibacillus 44249 Bacteria Bacteria 96.3 1.16e-21   NR WP_240647383.1 393251 g3213 i0 67.6 2.95609756097561 68 22 99.5 0 205 2 234 301 WP_240647383.1 3-dehydroquinate synthase [Paenibacillus nanensis] diamond 606 96.3 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus nanensis
27848443 27848443 PRJNA1072736_S_NODE_7544_length_151_cov_1.472222_g7539_i0 PRJNA1072736 7544 151 1.472222 2.22305522 Faecousia 2840588 Bacteria Bacteria 60.1 8.1e-9   NR MCI6850052.1 1898207 g7539 i0 86.5 2.20529801324503 37 5 73.5 0 150 40 50 86 MCI6850052.1 translation initiation factor IF-2 [Clostridiales bacterium] diamond 333 60.1 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales     Clostridiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;