contig_metadata
107 rows where bioproject = "PRJNA1069776" and tax_kingdom = "Orthornavirae"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 184558 | 184558 | PRJNA1069776_S_NODE_16701_length_254_cov_3.360190_g16387_i0 | PRJNA1069776 | 16701 | 254 | 3.36019 | 8.5348826 | Pestivirus bovis | 3052619 | Viruses | Viruses | 399 | 7.149999999999999e-107 | NTclustered | gi|1129880487|gb|KX170611.1| | 11099 | g16387 | i0 | 94.882 | 99.7795275590551 | 254 | 13 | 100 | 0 | 1 | 254 | 13 | 266 | Bovine viral diarrhea virus 1 isolate V098 NS5A gene, partial cds | blastn | 25344 | 399 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 184624 | 184624 | PRJNA1069776_S_NODE_21561_length_227_cov_488.326087_g21247_i0 | PRJNA1069776 | 21561 | 227 | 488.326087 | 1108.50021749 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 121 | 5.46e-23 | NTclustered | gi|2165835030|emb|OV196298.1| | 2697049 | g21247 | i0 | 94.872 | 41.1541850220264 | 78 | 2 | 34 | 2 | 10 | 87 | 75 | 150 | Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 | blastn | 9342 | 121 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 184667 | 184667 | PRJNA1069776_S_NODE_2441_length_465_cov_9.808057_g2128_i0 | PRJNA1069776 | 2441 | 465 | 9.808057 | 45.60746505 | Pestivirus bovis | 3052619 | Viruses | Viruses | 743 | 0 | NTclustered | gi|1540352923|gb|MH231153.1| | 11099 | g2128 | i0 | 95.484 | 99.5225806451613 | 465 | 21 | 100 | 0 | 1 | 465 | 3981 | 4445 | Bovine viral diarrhea virus 1 isolate Nebraska polyprotein gene, complete cds | blastn | 46278 | 743 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 184703 | 184703 | PRJNA1069776_S_NODE_2681_length_448_cov_86.866667_g2368_i0 | PRJNA1069776 | 2681 | 448 | 86.866667 | 389.16266816 | Pestivirus bovis | 3052619 | Viruses | Viruses | 728 | 0 | NTclustered | gi|459284076|gb|JX297517.1| | 981676 | g2368 | i0 | 95.982 | 100.897321428571 | 448 | 18 | 100 | 0 | 1 | 448 | 203 | 650 | Bovine viral diarrhea virus type 1b isolate Hercules polyprotein gene, complete cds | blastn | 45202 | 728 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 184972 | 184972 | PRJNA1069776_S_NODE_50601_length_155_cov_2.517857_g50287_i0 | PRJNA1069776 | 50601 | 155 | 2.517857 | 3.90267835 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 287 | 3.21e-73 | NTclustered | gi|2186340933|gb|OM464523.1| | 2697049 | g50287 | i0 | 100 | 100 | 155 | 0 | 100 | 0 | 1 | 155 | 18422 | 18268 | Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-STM-9XEERMHV2/2022, complete genome | blastn | 15500 | 287 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 1014674 | 1014674 | PRJNA1069776_S_NODE_34081_length_186_cov_3.202797_g33767_i0 | PRJNA1069776 | 34081 | 186 | 3.202797 | 5.95720242 | Pestivirus | 11095 | Viruses | Viruses | 300 | 5.1400000000000004e-77 | NTclustered | gi|1129880587|gb|KX170661.1| | 11099 | g33767 | i0 | 95.699 | 99.4247311827957 | 186 | 8 | 100 | 0 | 1 | 186 | 1488 | 1673 | Bovine viral diarrhea virus 1 isolate V045 NS5B gene, partial cds | blastn | 18493 | 303 | 0.99009900990099 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 1459110 | 1459110 | PRJNA1069776_S_NODE_1122_length_646_cov_5.540630_g884_i0 | PRJNA1069776 | 1122 | 646 | 5.54063 | 35.7924698 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 1194 | 0 | NTclustered | gi|2155894178|emb|OV044165.1| | 2697049 | g884 | i0 | 100 | 100 | 646 | 0 | 100 | 0 | 1 | 646 | 26399 | 25754 | Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 | blastn | 64600 | 1194 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 1459138 | 1459138 | PRJNA1069776_S_NODE_1342_length_590_cov_13.881170_g1068_i0 | PRJNA1069776 | 1342 | 590 | 13.88117 | 81.898903 | Pestivirus bovis | 3052619 | Viruses | Viruses | 1013 | 0 | NTclustered | gi|1129880361|gb|KX170548.1| | 11099 | g1068 | i0 | 97.627 | 99.9847457627119 | 590 | 14 | 100 | 0 | 1 | 590 | 242 | 831 | Bovine viral diarrhea virus 1 isolate V060 NS4B gene, partial cds | blastn | 58991 | 1013 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 1459157 | 1459157 | PRJNA1069776_S_NODE_1462_length_569_cov_7.317490_g1180_i0 | PRJNA1069776 | 1462 | 569 | 7.31749 | 41.6365181 | Pestivirus tauri | 3052626 | Viruses | Viruses | 1007 | 0 | NTclustered | gi|1540352891|gb|MH231137.1| | 54315 | g1180 | i0 | 98.594 | 99.4604569420035 | 569 | 8 | 100 | 0 | 1 | 569 | 1179 | 611 | Bovine viral diarrhea virus 2 isolate MadSpl polyprotein gene, complete cds | blastn | 56593 | 1007 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 1459179 | 1459179 | PRJNA1069776_S_NODE_16222_length_257_cov_2.901869_g15908_i0 | PRJNA1069776 | 16222 | 257 | 2.901869 | 7.45780333 | Jujube closterovirus 1 | 3043313 | Viruses | Viruses | 54.7 | 0.006 | NTclustered | gi|2496749738|gb|OP673405.1| | 3043313 | g15908 | i0 | 100 | 0.221789883268482 | 29 | 0 | 11 | 0 | 1 | 29 | 6 | 34 | Jujube closterovirus 1 isolate AKS15-20, complete genome | blastn | 57 | 54.7 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Alsuviricetes | Martellivirales | Closteroviridae | Jujube closterovirus 1 | |||
| 1459233 | 1459233 | PRJNA1069776_S_NODE_2042_length_496_cov_11.604857_g1739_i0 | PRJNA1069776 | 2042 | 496 | 11.604857 | 57.56009072 | Pestivirus bovis | 3052619 | Viruses | Viruses | 797 | 0 | NTclustered | gi|1072900293|gb|KU756226.1| | 981676 | g1739 | i0 | 95.927 | 99.5766129032258 | 491 | 20 | 99 | 0 | 2 | 492 | 7059 | 7549 | Bovine viral diarrhea virus 1b strain HJ-1 polyprotein gene, complete cds | blastn | 49390 | 797 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 1459301 | 1459301 | PRJNA1069776_S_NODE_24782_length_214_cov_4.204678_g24468_i0 | PRJNA1069776 | 24782 | 214 | 4.204678 | 8.99801092 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 396 | 7.559999999999996e-106 | NTclustered | gi|2028980905|gb|MZ002360.1| | 2697049 | g24468 | i0 | 100 | 100 | 214 | 0 | 100 | 0 | 1 | 214 | 21639 | 21852 | Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome | blastn | 21400 | 396 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 1459398 | 1459398 | PRJNA1069776_S_NODE_32402_length_190_cov_6.000000_g32088_i0 | PRJNA1069776 | 32402 | 190 | 6 | 11.4 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 351 | 1.4399999999999997e-92 | NTclustered | gi|2055103307|emb|OU198267.1| | 2697049 | g32088 | i0 | 100 | 100 | 190 | 0 | 100 | 0 | 1 | 190 | 19872 | 20061 | Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 | blastn | 19000 | 351 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 1459478 | 1459478 | PRJNA1069776_S_NODE_38362_length_176_cov_3.887218_g38048_i0 | PRJNA1069776 | 38362 | 176 | 3.887218 | 6.84150368 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 326 | 7.92e-85 | NTclustered | gi|2028980905|gb|MZ002360.1| | 2697049 | g38048 | i0 | 100 | 100 | 176 | 0 | 100 | 0 | 1 | 176 | 23028 | 23203 | Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome | blastn | 17600 | 326 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 1459625 | 1459625 | PRJNA1069776_S_NODE_5242_length_369_cov_4.858896_g4928_i0 | PRJNA1069776 | 5242 | 369 | 4.858896 | 17.92932624 | Pestivirus bovis | 3052619 | Viruses | Viruses | 590 | 6.0099999999999985e-164 | NTclustered | gi|1129880209|gb|KX170472.1| | 11099 | g4928 | i0 | 95.393 | 103.436314363144 | 369 | 17 | 100 | 0 | 1 | 369 | 643 | 1011 | Bovine viral diarrhea virus 1 isolate V099 NS3 gene, partial cds | blastn | 38168 | 590 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 2289983 | 2289983 | PRJNA1069776_S_NODE_36802_length_180_cov_1.751825_g36488_i0 | PRJNA1069776 | 36802 | 180 | 1.751825 | 3.153285 | root | 1 | Root_unresolved | Root_unresolved | 54.7 | 0.004 | NTclustered | gi|1995060321|gb|MN450069.1| | 12164 | g36488 | i0 | 92.308 | 1 | 39 | 2 | 22 | 1 | 1 | 39 | 13 | 50 | Carnation latent virus isolate KL, complete genome | blastn | 180 | 54.7 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Alsuviricetes | Tymovirales | Betaflexiviridae | Carlavirus | Carlavirus latensdianthi | ||
| 2735095 | 2735095 | PRJNA1069776_S_NODE_13683_length_274_cov_7.051948_g13369_i0 | PRJNA1069776 | 13683 | 274 | 7.051948 | 19.32233752 | Pestivirus tauri | 3052626 | Viruses | Viruses | 429 | 9.949999999999999e-116 | NTclustered | gi|1540305503|gb|MH806435.1| | 54315 | g13369 | i0 | 94.891 | 99.463503649635 | 274 | 14 | 100 | 0 | 1 | 274 | 1805 | 1532 | Bovine viral diarrhea virus 2 isolate 1336H, complete genome | blastn | 27253 | 429 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 2735695 | 2735695 | PRJNA1069776_S_NODE_9523_length_312_cov_5.271375_g9209_i0 | PRJNA1069776 | 9523 | 312 | 5.271375 | 16.44669 | Pestivirus bovis | 3052619 | Viruses | Viruses | 527 | 3.9799999999999996e-145 | NTclustered | gi|1408941636|gb|MH311877.1| | 981676 | g9209 | i0 | 97.115 | 99.9551282051282 | 312 | 9 | 100 | 0 | 1 | 312 | 1131 | 1442 | Bovine viral diarrhea virus 1b isolate B4A d168 polyprotein gene, partial cds | blastn | 31186 | 527 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 2735696 | 2735696 | PRJNA1069776_S_NODE_9543_length_312_cov_3.843866_g9229_i0 | PRJNA1069776 | 9543 | 312 | 3.843866 | 11.99286192 | Pestivirus bovis | 3052619 | Viruses | Viruses | 438 | 1.9199999999999998e-118 | NTclustered | gi|2587731848|gb|OR620203.1| | 11099 | g9229 | i0 | 91.987 | 65.650641025641 | 312 | 25 | 100 | 0 | 1 | 312 | 4348 | 4037 | Bovine viral diarrhea virus 1 strain 2402UYSJ/2016, partial genome | blastn | 20483 | 438 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 3565213 | 3565213 | PRJNA1069776_S_NODE_2263_length_478_cov_17.698851_g1953_i0 | PRJNA1069776 | 2263 | 478 | 17.698851 | 84.60050778 | Pestivirus | 11095 | Viruses | Viruses | 665 | 0 | NTclustered | gi|386285712|gb|JQ418633.1| | 11099 | g1953 | i0 | 93.157 | 44.9142259414226 | 453 | 31 | 95 | 0 | 4 | 456 | 9842 | 9390 | Bovine viral diarrhea virus 1 isolate 08GB44-1 polyprotein gene, complete cds | blastn | 21469 | 665 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 4010990 | 4010990 | PRJNA1069776_S_NODE_1164_length_635_cov_7.096284_g913_i0 | PRJNA1069776 | 1164 | 635 | 7.096284 | 45.0614034 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 1173 | 0 | NTclustered | gi|2040238967|emb|OU007694.1| | 2697049 | g913 | i0 | 100 | 100 | 635 | 0 | 100 | 0 | 1 | 635 | 25710 | 25076 | Severe acute respiratory syndrome coronavirus 2 isolate hCoV-19/Switzerland/UR-ETHZ-260020/2020 genome assembly, chromosome: 1 | blastn | 63500 | 1173 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 4010997 | 4010997 | PRJNA1069776_S_NODE_12024_length_288_cov_4.216327_g11710_i0 | PRJNA1069776 | 12024 | 288 | 4.216327 | 12.14302176 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 532 | 7.8e-147 | NTclustered | gi|2164092590|gb|OL820718.1| | 2697049 | g11710 | i0 | 100 | 100 | 288 | 0 | 100 | 0 | 1 | 288 | 18228 | 17941 | Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CO-CDPHE-2102190097/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), and nucleocapsid phosphoprotein (N) genes, complete cds; and ORF10 protein (ORF10) gene, partial cds | blastn | 28800 | 532 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 4011012 | 4011012 | PRJNA1069776_S_NODE_12984_length_280_cov_3.130802_g12670_i0 | PRJNA1069776 | 12984 | 280 | 3.130802 | 8.7662456 | Jujube closterovirus 1 | 3043313 | Viruses | Viruses | 56.5 | 0.002 | NTclustered | gi|2496749738|gb|OP673405.1| | 3043313 | g12670 | i0 | 100 | 0.207142857142857 | 30 | 0 | 11 | 0 | 251 | 280 | 35 | 6 | Jujube closterovirus 1 isolate AKS15-20, complete genome | blastn | 58 | 56.5 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Alsuviricetes | Martellivirales | Closteroviridae | Jujube closterovirus 1 | |||
| 4011122 | 4011122 | PRJNA1069776_S_NODE_20524_length_232_cov_8.444444_g20210_i0 | PRJNA1069776 | 20524 | 232 | 8.444444 | 19.59111008 | Pestivirus bovis | 3052619 | Viruses | Viruses | 390 | 3.87e-104 | NTclustered | gi|1129880601|gb|KX170668.1| | 11099 | g20210 | i0 | 96.983 | 99.3189655172414 | 232 | 7 | 100 | 0 | 1 | 232 | 1010 | 779 | Bovine viral diarrhea virus 1 isolate V100 NS5B gene, partial cds | blastn | 23042 | 390 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 4011378 | 4011378 | PRJNA1069776_S_NODE_40704_length_172_cov_0.914729_g40390_i0 | PRJNA1069776 | 40704 | 172 | 0.914729 | 1.57333388 | Pestivirus tauri | 3052626 | Viruses | Viruses | 307 | 2.79e-79 | NTclustered | gi|998226330|gb|KT832820.1| | 54315 | g40390 | i0 | 98.837 | 98.2848837209302 | 172 | 2 | 100 | 0 | 1 | 172 | 11622 | 11451 | Bovine viral diarrhea virus 2 strain USMARC-60767, complete genome | blastn | 16905 | 307 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 4011538 | 4011538 | PRJNA1069776_S_NODE_5884_length_358_cov_2.387302_g5570_i0 | PRJNA1069776 | 5884 | 358 | 2.387302 | 8.54654116 | Pestivirus bovis | 3052619 | Viruses | Viruses | 534 | 2.76e-147 | NTclustered | gi|633265981|gb|KJ541471.1| | 11099 | g5570 | i0 | 93.575 | 96.9832402234637 | 358 | 23 | 100 | 0 | 1 | 358 | 4289 | 4646 | Bovine viral diarrhea virus 1 isolate GS5, complete genome | blastn | 34720 | 534 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 4011585 | 4011585 | PRJNA1069776_S_NODE_9504_length_312_cov_8.115242_g9190_i0 | PRJNA1069776 | 9504 | 312 | 8.115242 | 25.31955504 | Pestivirus bovis | 3052619 | Viruses | Viruses | 540 | 5.11e-149 | NTclustered | gi|916370596|gb|KT355592.1| | 981676 | g9190 | i0 | 98.689 | 97.6217948717949 | 305 | 3 | 97 | 1 | 1 | 304 | 8853 | 9157 | Bovine viral diarrhea virus type 1b strain HP-KY-RK13, complete genome | blastn | 30458 | 540 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 4842737 | 4842737 | PRJNA1069776_S_NODE_41224_length_171_cov_1.125000_g40910_i0 | PRJNA1069776 | 41224 | 171 | 1.125 | 1.92375 | Pestivirus | 11095 | Viruses | Viruses | 300 | 4.63e-77 | NTclustered | gi|386285714|gb|JQ418635.1| | 54315 | g40910 | i0 | 98.246 | 60.9766081871345 | 171 | 3 | 100 | 0 | 1 | 171 | 10031 | 9861 | Bovine viral diarrhea virus 2 isolate 08Q723 polyprotein gene, complete cds | blastn | 10427 | 300 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 5287286 | 5287286 | PRJNA1069776_S_NODE_1225_length_618_cov_13.415652_g962_i0 | PRJNA1069776 | 1225 | 618 | 13.415652 | 82.90872936 | Pestivirus bovis | 3052619 | Viruses | Viruses | 915 | 0 | NTclustered | gi|2040746277|gb|MT654137.1| | 11099 | g962 | i0 | 93.366 | 96.1003236245955 | 618 | 41 | 100 | 0 | 1 | 618 | 1640 | 1023 | Bovine viral diarrhea virus 1 strain 20-8536, complete genome | blastn | 59390 | 915 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 5287409 | 5287409 | PRJNA1069776_S_NODE_19245_length_239_cov_3.183673_g18931_i0 | PRJNA1069776 | 19245 | 239 | 3.183673 | 7.60897847 | Pestivirus bovis | 3052619 | Viruses | Viruses | 372 | 1.45e-98 | NTclustered | gi|575471150|gb|KF772785.1| | 11099 | g18931 | i0 | 95.299 | 99.5983263598326 | 234 | 11 | 98 | 0 | 1 | 234 | 8124 | 8357 | Bovine viral diarrhea virus 1 isolate CC13B, complete genome | blastn | 23804 | 372 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 5287412 | 5287412 | PRJNA1069776_S_NODE_1945_length_505_cov_13.621212_g1644_i0 | PRJNA1069776 | 1945 | 505 | 13.621212 | 68.7871206 | Pestivirus tauri | 3052626 | Viruses | Viruses | 689 | 0 | NTclustered | gi|1751376243|gb|MK599227.1| | 54315 | g1644 | i0 | 91.287 | 99.950495049505 | 505 | 44 | 100 | 0 | 1 | 505 | 9634 | 9130 | Bovine viral diarrhea virus 2 strain SD-1 polyprotein gene, complete cds | blastn | 50475 | 689 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 5287887 | 5287887 | PRJNA1069776_S_NODE_8025_length_328_cov_4830.382456_g7711_i0 | PRJNA1069776 | 8025 | 328 | 4830.382456 | 15843.65445568 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 126 | 1.79e-24 | NTclustered | gi|2165835030|emb|OV196298.1| | 2697049 | g7711 | i0 | 96.154 | 29.0884146341463 | 78 | 1 | 25 | 2 | 10 | 87 | 75 | 150 | Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 | blastn | 9541 | 126 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 6117757 | 6117757 | PRJNA1069776_S_NODE_16905_length_252_cov_13112.430622_g16591_i0 | PRJNA1069776 | 16905 | 252 | 13112.430622 | 33043.32516744 | Viruses | 10239 | Viruses | Viruses | 115 | 2.8700000000000003e-21 | NTclustered | gi|2165832904|emb|OV195202.1| | 2697049 | g16591 | i0 | 93.59 | 54.3134920634921 | 78 | 3 | 31 | 2 | 8 | 85 | 86 | 161 | Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 | blastn | 13687 | 115 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 6117921 | 6117921 | PRJNA1069776_S_NODE_5405_length_366_cov_8.083591_g5091_i0 | PRJNA1069776 | 5405 | 366 | 8.083591 | 29.58594306 | Pestivirus | 11095 | Viruses | Viruses | 592 | 1.6599999999999993e-164 | NTclustered | gi|1036031867|gb|AH012705.2| | 11099 | g5091 | i0 | 96.629 | 97.0765027322404 | 356 | 12 | 97 | 0 | 1 | 356 | 4925 | 5280 | Bovine viral diarrhea virus 1 strain CP8 polyprotein genes, partial cds | blastn | 35530 | 592 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 6117934 | 6117934 | PRJNA1069776_S_NODE_6765_length_344_cov_8.478405_g6451_i0 | PRJNA1069776 | 6765 | 344 | 8.478405 | 29.1657132 | Pestivirus | 11095 | Viruses | Viruses | 568 | 2.6099999999999992e-157 | NTclustered | gi|2625903273|gb|ON676187.1| | 11099 | g6451 | i0 | 96.501 | 99.6220930232558 | 343 | 12 | 99 | 0 | 2 | 344 | 11493 | 11151 | Bovine viral diarrhea virus 1 strain Chilgok, complete genome | blastn | 34270 | 568 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 6562595 | 6562595 | PRJNA1069776_S_NODE_22266_length_224_cov_5.403315_g21952_i0 | PRJNA1069776 | 22266 | 224 | 5.403315 | 12.1034256 | Carlavirus latensdianthi | 3427766 | Viruses | Viruses | 54.7 | 0.006 | NTclustered | gi|1995060321|gb|MN450069.1| | 12164 | g21952 | i0 | 100 | 0.660714285714286 | 29 | 0 | 13 | 0 | 1 | 29 | 13 | 41 | Carnation latent virus isolate KL, complete genome | blastn | 148 | 54.7 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Alsuviricetes | Tymovirales | Betaflexiviridae | Carlavirus | Carlavirus latensdianthi | ||
| 6562844 | 6562844 | PRJNA1069776_S_NODE_3986_length_397_cov_15.124294_g3672_i0 | PRJNA1069776 | 3986 | 397 | 15.124294 | 60.04344718 | Pestivirus bovis | 3052619 | Viruses | Viruses | 667 | 0 | NTclustered | gi|1350888790|gb|KY852366.1| | 11099 | g3672 | i0 | 96.977 | 99.6146095717884 | 397 | 12 | 100 | 0 | 1 | 397 | 23 | 419 | Bovine viral diarrhea virus 1 isolate S1118 E2 glycoprotein gene, partial cds | blastn | 39547 | 667 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 6562985 | 6562985 | PRJNA1069776_S_NODE_5266_length_368_cov_28.646154_g4952_i0 | PRJNA1069776 | 5266 | 368 | 28.646154 | 105.41784672 | Pestivirus bovis | 3052619 | Viruses | Viruses | 592 | 1.6699999999999997e-164 | NTclustered | gi|2731951075|gb|PP770551.1| | 11099 | g4952 | i0 | 96.379 | 97.2527173913043 | 359 | 13 | 98 | 0 | 1 | 359 | 9801 | 10159 | Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome | blastn | 35789 | 592 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 7837324 | 7837324 | PRJNA1069776_S_NODE_29467_length_198_cov_4.741935_g29153_i0 | PRJNA1069776 | 29467 | 198 | 4.741935 | 9.3890313 | Carlavirus latensdianthi | 3427766 | Viruses | Viruses | 54.7 | 0.005 | NTclustered | gi|1995060321|gb|MN450069.1| | 12164 | g29153 | i0 | 100 | 0.747474747474748 | 29 | 0 | 15 | 0 | 170 | 198 | 41 | 13 | Carnation latent virus isolate KL, complete genome | blastn | 148 | 54.7 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Alsuviricetes | Tymovirales | Betaflexiviridae | Carlavirus | Carlavirus latensdianthi | ||
| 9112333 | 9112333 | PRJNA1069776_S_NODE_29988_length_197_cov_2.701299_g29674_i0 | PRJNA1069776 | 29988 | 197 | 2.701299 | 5.32155903 | Pestivirus bovis | 3052619 | Viruses | Viruses | 305 | 1.19e-78 | NTclustered | gi|2648477067|gb|OR238997.1| | 11099 | g29674 | i0 | 94.416 | 100.055837563452 | 197 | 11 | 100 | 0 | 1 | 197 | 760 | 564 | Bovine viral diarrhea virus 1 isolate 125_SL35 envelope glycoprotein E2 gene, partial cds | blastn | 19711 | 305 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 9112557 | 9112557 | PRJNA1069776_S_NODE_47708_length_159_cov_4.456897_g47394_i0 | PRJNA1069776 | 47708 | 159 | 4.456897 | 7.08646623 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 294 | 1.98e-75 | NTclustered | gi|2499447400|emb|OX492971.1| | 2697049 | g47394 | i0 | 100 | 100 | 159 | 0 | 100 | 0 | 1 | 159 | 18745 | 18903 | Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite | blastn | 15900 | 294 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 10387869 | 10387869 | PRJNA1069776_S_NODE_19449_length_238_cov_3.133333_g19135_i0 | PRJNA1069776 | 19449 | 238 | 3.133333 | 7.45733254 | Pestivirus tauri | 3052626 | Viruses | Viruses | 390 | 3.99e-104 | NTclustered | gi|1751376243|gb|MK599227.1| | 54315 | g19135 | i0 | 96.218 | 99.9747899159664 | 238 | 9 | 100 | 0 | 1 | 238 | 8744 | 8981 | Bovine viral diarrhea virus 2 strain SD-1 polyprotein gene, complete cds | blastn | 23794 | 390 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 10388111 | 10388111 | PRJNA1069776_S_NODE_37529_length_178_cov_2.844444_g37215_i0 | PRJNA1069776 | 37529 | 178 | 2.844444 | 5.06311032 | Jujube closterovirus 1 | 3043313 | Viruses | Viruses | 54.7 | 0.004 | NTclustered | gi|2496749738|gb|OP673405.1| | 3043313 | g37215 | i0 | 94.286 | 0.353932584269663 | 35 | 2 | 20 | 0 | 1 | 35 | 6 | 40 | Jujube closterovirus 1 isolate AKS15-20, complete genome | blastn | 63 | 54.7 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Alsuviricetes | Martellivirales | Closteroviridae | Jujube closterovirus 1 | |||
| 10388146 | 10388146 | PRJNA1069776_S_NODE_409_length_2007_cov_16.252546_g401_i0 | PRJNA1069776 | 409 | 2007 | 16.252546 | 326.18859822 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 3701 | 0 | NTclustered | gi|1854182511|gb|MT605815.1| | 2697049 | g401 | i0 | 99.95 | 100.057299451918 | 2007 | 1 | 100 | 0 | 1 | 2007 | 29838 | 27832 | Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-S112/2020, complete genome | blastn | 200815 | 3701 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 10388156 | 10388156 | PRJNA1069776_S_NODE_42129_length_169_cov_2.436508_g41815_i0 | PRJNA1069776 | 42129 | 169 | 2.436508 | 4.11769852 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 313 | 5.859999999999999e-81 | NTclustered | gi|2028980905|gb|MZ002360.1| | 2697049 | g41815 | i0 | 100 | 100 | 169 | 0 | 100 | 0 | 1 | 169 | 22103 | 22271 | Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome | blastn | 16900 | 313 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 10388265 | 10388265 | PRJNA1069776_S_NODE_52709_length_152_cov_3.844037_g52395_i0 | PRJNA1069776 | 52709 | 152 | 3.844037 | 5.84293624 | Pestivirus bovis | 3052619 | Viruses | Viruses | 215 | 1.5e-51 | NTclustered | gi|1771880388|emb|LR699803.1| | 11099 | g52395 | i0 | 92.105 | 86.4013157894737 | 152 | 12 | 100 | 0 | 1 | 152 | 11700 | 11851 | bovine viral diarrhea virus polyprotein gene for polyprotein, Npro, C, E1, E2, p7, NS2, NS3, NS4A, NS4B, NS5A, NS5B region | blastn | 13133 | 215 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 10388357 | 10388357 | PRJNA1069776_S_NODE_9529_length_312_cov_4.513011_g9215_i0 | PRJNA1069776 | 9529 | 312 | 4.513011 | 14.08059432 | Pestivirus bovis | 3052619 | Viruses | Viruses | 477 | 4.06e-130 | NTclustered | gi|165292292|dbj|AB359924.1| | 11099 | g9215 | i0 | 94.231 | 99.9615384615385 | 312 | 18 | 100 | 0 | 1 | 312 | 1241 | 930 | Bovine viral diarrhea virus 1 gene for polyprotein (N-terminal protease, Core, Erns region), partial cds, strain: IS27CP/01 | blastn | 31188 | 477 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 11663310 | 11663310 | PRJNA1069776_S_NODE_2370_length_470_cov_5.501171_g2058_i0 | PRJNA1069776 | 2370 | 470 | 5.501171 | 25.8555037 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 869 | 0 | NTclustered | gi|2028980905|gb|MZ002360.1| | 2697049 | g2058 | i0 | 100 | 100 | 470 | 0 | 100 | 0 | 1 | 470 | 27700 | 27231 | Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome | blastn | 47000 | 869 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 11663506 | 11663506 | PRJNA1069776_S_NODE_3690_length_405_cov_15.566298_g3376_i0 | PRJNA1069776 | 3690 | 405 | 15.566298 | 63.0435069 | Pestivirus bovis | 3052619 | Viruses | Viruses | 586 | 8.609999999999997e-163 | NTclustered | gi|77799875|dbj|AB111961.2| | 233883 | g3376 | i0 | 92.822 | 99.4543209876543 | 404 | 29 | 99 | 0 | 2 | 405 | 2052 | 2455 | Bovine viral diarrhea virus 799ncp gene for poryprotein, partai cds, strain: 799ncp | blastn | 40279 | 586 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 11663534 | 11663534 | PRJNA1069776_S_NODE_38850_length_175_cov_3.825758_g38536_i0 | PRJNA1069776 | 38850 | 175 | 3.825758 | 6.6950765 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 324 | 2.83e-84 | NTclustered | gi|2028980905|gb|MZ002360.1| | 2697049 | g38536 | i0 | 100 | 100 | 175 | 0 | 100 | 0 | 1 | 175 | 23412 | 23586 | Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome | blastn | 17500 | 324 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 11663647 | 11663647 | PRJNA1069776_S_NODE_4990_length_373_cov_22.878788_g4676_i0 | PRJNA1069776 | 4990 | 373 | 22.878788 | 85.33787924 | Pestivirus bovis | 3052619 | Viruses | Viruses | 573 | 6.119999999999999e-159 | NTclustered | gi|2086549820|dbj|LC648259.1| | 981676 | g4676 | i0 | 94.58 | 99.7855227882037 | 369 | 20 | 99 | 0 | 5 | 373 | 1347 | 979 | Bovine viral diarrhea virus 1b BVDV/Shihoro/O_39 gene for structural glycoprotein E2, partial cds | blastn | 37220 | 573 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 12493650 | 12493650 | PRJNA1069776_S_NODE_770_length_818_cov_19.920000_g617_i0 | PRJNA1069776 | 770 | 818 | 19.92 | 162.9456 | Pestivirus | 11095 | Viruses | Viruses | 1218 | 0 | NTclustered | gi|2789676|gb|AF041040.1|AF041040 | 11099 | g617 | i0 | 93.529 | 99.3068459657702 | 819 | 51 | 100 | 2 | 1 | 818 | 1114 | 297 | Pestivirus type 1 polyprotein gene, complete cds | blastn | 81233 | 1218 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 12493659 | 12493659 | PRJNA1069776_S_NODE_9170_length_315_cov_11.768382_g8856_i0 | PRJNA1069776 | 9170 | 315 | 11.768382 | 37.0704033 | Pestivirus | 11095 | Viruses | Viruses | 507 | 5.24e-139 | NTclustered | gi|2731951075|gb|PP770551.1| | 11099 | g8856 | i0 | 95.847 | 99.984126984127 | 313 | 13 | 99 | 0 | 3 | 315 | 4336 | 4024 | Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome | blastn | 31495 | 507 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 12938270 | 12938270 | PRJNA1069776_S_NODE_1091_length_653_cov_7.232787_g864_i0 | PRJNA1069776 | 1091 | 653 | 7.232787 | 47.23009911 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 1206 | 0 | NTclustered | gi|2156878052|gb|OL678782.1| | 2697049 | g864 | i0 | 100 | 100 | 653 | 0 | 100 | 0 | 1 | 653 | 26571 | 27223 | Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CO-CDPHE-2011114568/2020, complete genome | blastn | 65300 | 1206 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 12938389 | 12938389 | PRJNA1069776_S_NODE_1951_length_504_cov_79.845987_g1649_i0 | PRJNA1069776 | 1951 | 504 | 79.845987 | 402.42377448 | Pestivirus bovis | 3052619 | Viruses | Viruses | 832 | 0 | NTclustered | gi|77799875|dbj|AB111961.2| | 233883 | g1649 | i0 | 96.429 | 100.813492063492 | 504 | 18 | 100 | 0 | 1 | 504 | 386 | 889 | Bovine viral diarrhea virus 799ncp gene for poryprotein, partai cds, strain: 799ncp | blastn | 50810 | 832 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 12938522 | 12938522 | PRJNA1069776_S_NODE_30571_length_195_cov_3.914474_g30257_i0 | PRJNA1069776 | 30571 | 195 | 3.914474 | 7.6332243 | Porcine bastrovirus | 2588662 | Viruses | Viruses | 54.7 | 0.005 | NTclustered | gi|1682068313|gb|MK387176.1| | 2588662 | g30257 | i0 | 100 | 0.292307692307692 | 29 | 0 | 15 | 0 | 1 | 29 | 13 | 41 | Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome | blastn | 57 | 54.7 | 1 | Viruses | Orthornavirae | Pisuviricota | Stelpaviricetes | Stellavirales | Astroviridae | Porcine bastrovirus | |||
| 12938874 | 12938874 | PRJNA1069776_S_NODE_9691_length_310_cov_7.033708_g9377_i0 | PRJNA1069776 | 9691 | 310 | 7.033708 | 21.8044948 | Pestivirus bovis | 3052619 | Viruses | Viruses | 484 | 2.4099999999999996e-132 | NTclustered | gi|1418359717|dbj|LC068605.1| | 11099 | g9377 | i0 | 94.839 | 99.9870967741935 | 310 | 16 | 100 | 0 | 1 | 310 | 10705 | 10396 | Bovine viral diarrhea virus 1 genomic RNA, complete genome, strain: No.12_E- | blastn | 30996 | 484 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 13768025 | 13768025 | PRJNA1069776_S_NODE_3391_length_416_cov_12.021448_g3077_i0 | PRJNA1069776 | 3391 | 416 | 12.021448 | 50.00922368 | Pestivirus | 11095 | Viruses | Viruses | 673 | 0 | NTclustered | gi|2731951075|gb|PP770551.1| | 11099 | g3077 | i0 | 95.904 | 99.9663461538462 | 415 | 17 | 99 | 0 | 2 | 416 | 5911 | 5497 | Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome | blastn | 41586 | 673 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 14213572 | 14213572 | PRJNA1069776_S_NODE_40412_length_172_cov_3.279070_g40098_i0 | PRJNA1069776 | 40412 | 172 | 3.27907 | 5.6400004 | Pestivirus bovis | 3052619 | Viruses | Viruses | 268 | 1.32e-67 | NTclustered | gi|800924330|gb|KP941590.1| | 11099 | g40098 | i0 | 94.767 | 78.5058139534884 | 172 | 9 | 100 | 0 | 1 | 172 | 4444 | 4273 | Bovine viral diarrhea virus 1 strain USMARC-55924 polyprotein gene, complete cds | blastn | 13503 | 268 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 15042287 | 15042287 | PRJNA1069776_S_NODE_15752_length_259_cov_50.856481_g15438_i0 | PRJNA1069776 | 15752 | 259 | 50.856481 | 131.71828579 | Pestivirus | 11095 | Viruses | Viruses | 412 | 9.39e-111 | NTclustered | gi|2731951075|gb|PP770551.1| | 11099 | g15438 | i0 | 95.367 | 100.891891891892 | 259 | 12 | 100 | 0 | 1 | 259 | 1017 | 759 | Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome | blastn | 26131 | 412 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 15487296 | 15487296 | PRJNA1069776_S_NODE_19773_length_236_cov_5.347150_g19459_i0 | PRJNA1069776 | 19773 | 236 | 5.34715 | 12.619274 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 436 | 4.999999999999999e-118 | NTclustered | gi|2499447400|emb|OX492971.1| | 2697049 | g19459 | i0 | 100 | 100 | 236 | 0 | 100 | 0 | 1 | 236 | 24311 | 24076 | Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite | blastn | 23600 | 436 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 15487323 | 15487323 | PRJNA1069776_S_NODE_22113_length_225_cov_3.445055_g21799_i0 | PRJNA1069776 | 22113 | 225 | 3.445055 | 7.75137375 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 416 | 6.159999999999998e-112 | NTclustered | gi|2499447400|emb|OX492971.1| | 2697049 | g21799 | i0 | 100 | 100 | 225 | 0 | 100 | 0 | 1 | 225 | 17750 | 17974 | Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite | blastn | 22500 | 416 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 15487427 | 15487427 | PRJNA1069776_S_NODE_29833_length_197_cov_4.272727_g29519_i0 | PRJNA1069776 | 29833 | 197 | 4.272727 | 8.41727219 | Pestivirus tauri | 3052626 | Viruses | Viruses | 320 | 4.24e-83 | NTclustered | gi|346577970|gb|JF714967.1| | 54315 | g29519 | i0 | 95.939 | 87.1928934010152 | 197 | 8 | 100 | 0 | 1 | 197 | 10973 | 11169 | Bovine viral diarrhea virus 2 strain HLJ-10, complete genome | blastn | 17177 | 320 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 15487455 | 15487455 | PRJNA1069776_S_NODE_31553_length_193_cov_1.600000_g31239_i0 | PRJNA1069776 | 31553 | 193 | 1.6 | 3.088 | Porcine bastrovirus | 2588662 | Viruses | Viruses | 58.4 | 3.58e-4 | NTclustered | gi|1682068313|gb|MK387176.1| | 2588662 | g31239 | i0 | 100 | 0.305699481865285 | 31 | 0 | 16 | 0 | 1 | 31 | 13 | 43 | Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome | blastn | 59 | 58.4 | 1 | Viruses | Orthornavirae | Pisuviricota | Stelpaviricetes | Stellavirales | Astroviridae | Porcine bastrovirus | |||
| 15487649 | 15487649 | PRJNA1069776_S_NODE_4793_length_378_cov_4.435821_g4479_i0 | PRJNA1069776 | 4793 | 378 | 4.435821 | 16.76740338 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 695 | 0 | NTclustered | gi|2120308425|gb|OK617576.1| | 2697049 | g4479 | i0 | 99.735 | 100 | 378 | 1 | 100 | 0 | 1 | 378 | 24671 | 25048 | Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/MO-CDC-ASC210091322/2021 ORF1ab polyprotein (ORF1ab) gene, partial cds; ORF1a polyprotein (ORF1ab) gene, complete cds; surface glycoprotein (S) gene, partial cds; ORF3a protein (ORF3a), envelope protein (E), and membrane glycoprotein (M) genes, complete cds; ORF6 protein (ORF6) gene, partial cds; ORF7a protein (ORF7a) gene, complete cds; ORF7b (ORF7b) gene, partial cds; and ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds | blastn | 37800 | 695 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 15487774 | 15487774 | PRJNA1069776_S_NODE_9193_length_315_cov_5.558824_g8879_i0 | PRJNA1069776 | 9193 | 315 | 5.558824 | 17.5102956 | Siniperhavirus chuatsi | 2956453 | Viruses | Viruses | 52.8 | 0.029 | NTclustered | gi|1720077963|gb|MK397811.2| | 2527734 | g8879 | i0 | 100 | 0.0888888888888889 | 28 | 0 | 9 | 0 | 1 | 28 | 53 | 80 | Micropterus salmoides rhabdovirus strain MSRV-YH01, complete genome | blastn | 28 | 52.8 | 1 | Viruses | Orthornavirae | Negarnaviricota | Monjiviricetes | Mononegavirales | Rhabdoviridae | Siniperhavirus | Siniperhavirus chuatsi | ||
| 16317058 | 16317058 | PRJNA1069776_S_NODE_13013_length_279_cov_11605.105932_g12699_i0 | PRJNA1069776 | 13013 | 279 | 11605.105932 | 32378.24555028 | Viruses | 10239 | Viruses | Viruses | 115 | 3.23e-21 | NTclustered | gi|2165832904|emb|OV195202.1| | 2697049 | g12699 | i0 | 93.59 | 22.9354838709677 | 78 | 3 | 28 | 2 | 8 | 85 | 86 | 161 | Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 | blastn | 6399 | 115 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 16317091 | 16317091 | PRJNA1069776_S_NODE_2033_length_497_cov_71.726872_g1730_i0 | PRJNA1069776 | 2033 | 497 | 71.726872 | 356.48255384 | Pestivirus | 11095 | Viruses | Viruses | 819 | 0 | NTclustered | gi|2634048157|gb|OR611923.3| | 11099 | g1730 | i0 | 96.378 | 99.9839034205231 | 497 | 18 | 100 | 0 | 1 | 497 | 748 | 1244 | Bovine viral diarrhea virus 1 isolate 18H17 polyprotein gene, complete cds | blastn | 49692 | 819 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 16761441 | 16761441 | PRJNA1069776_S_NODE_13654_length_274_cov_56.497835_g13340_i0 | PRJNA1069776 | 13654 | 274 | 56.497835 | 154.8040679 | Pestivirus bovis | 3052619 | Viruses | Viruses | 442 | 1.2799999999999994e-119 | NTclustered | gi|953966940|dbj|LC099927.1| | 11099 | g13340 | i0 | 97.665 | 93.1386861313869 | 257 | 6 | 94 | 0 | 1 | 257 | 282 | 26 | Bovine viral diarrhea virus 1 genomic RNA, 5' UTR, partial sequence, isolate: Mongolia_3 | blastn | 25520 | 442 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 16761447 | 16761447 | PRJNA1069776_S_NODE_14294_length_269_cov_6432.787611_g13980_i0 | PRJNA1069776 | 14294 | 269 | 6432.787611 | 17304.19867359 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 128 | 3.9799999999999998e-25 | NTclustered | gi|2165832904|emb|OV195202.1| | 2697049 | g13980 | i0 | 94.118 | 27.4200743494424 | 85 | 3 | 32 | 2 | 10 | 94 | 30108 | 30026 | Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 | blastn | 7376 | 128 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 16761498 | 16761498 | PRJNA1069776_S_NODE_1794_length_523_cov_3.395833_g1496_i0 | PRJNA1069776 | 1794 | 523 | 3.395833 | 17.76020659 | Pestivirus bovis | 3052619 | Viruses | Viruses | 795 | 0 | NTclustered | gi|1129880425|gb|KX170580.1| | 11099 | g1496 | i0 | 94.073 | 99.7992351816444 | 523 | 31 | 100 | 0 | 1 | 523 | 899 | 377 | Bovine viral diarrhea virus 1 isolate V099 NS4B gene, partial cds | blastn | 52195 | 795 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 16761928 | 16761928 | PRJNA1069776_S_NODE_52014_length_153_cov_2.545455_g51700_i0 | PRJNA1069776 | 52014 | 153 | 2.545455 | 3.89454615 | Pestivirus bovis | 3052619 | Viruses | Viruses | 267 | 4.1099999999999994e-67 | NTclustered | gi|323219|gb|M87815.1|BVDMSEQK | 11099 | g51700 | i0 | 98.039 | 99.5555555555556 | 153 | 3 | 100 | 0 | 1 | 153 | 212 | 60 | Bovine viral diarrhea virus mRNA sequence | blastn | 15232 | 267 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 16761989 | 16761989 | PRJNA1069776_S_NODE_7474_length_335_cov_16.219178_g7160_i0 | PRJNA1069776 | 7474 | 335 | 16.219178 | 54.3342463 | Pestivirus bovis | 3052619 | Viruses | Viruses | 523 | 5.569999999999998e-144 | NTclustered | gi|1540352923|gb|MH231153.1| | 11099 | g7160 | i0 | 94.91 | 99.7462686567164 | 334 | 17 | 99 | 0 | 2 | 335 | 1031 | 1364 | Bovine viral diarrhea virus 1 isolate Nebraska polyprotein gene, complete cds | blastn | 33415 | 523 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 18036351 | 18036351 | PRJNA1069776_S_NODE_20635_length_232_cov_3.111111_g20321_i0 | PRJNA1069776 | 20635 | 232 | 3.111111 | 7.21777752 | Carlavirus latensdianthi | 3427766 | Viruses | Viruses | 54.7 | 0.006 | NTclustered | gi|1995060321|gb|MN450069.1| | 12164 | g20321 | i0 | 100 | 0.607758620689655 | 29 | 0 | 13 | 0 | 1 | 29 | 13 | 41 | Carnation latent virus isolate KL, complete genome | blastn | 141 | 54.7 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Alsuviricetes | Tymovirales | Betaflexiviridae | Carlavirus | Carlavirus latensdianthi | ||
| 18866125 | 18866125 | PRJNA1069776_S_NODE_10015_length_306_cov_50.323194_g9701_i0 | PRJNA1069776 | 10015 | 306 | 50.323194 | 153.98897364 | Pestivirus | 11095 | Viruses | Viruses | 516 | 8.42e-142 | NTclustered | gi|800924330|gb|KP941590.1| | 11099 | g9701 | i0 | 97.059 | 99.8725490196078 | 306 | 9 | 100 | 0 | 1 | 306 | 610 | 305 | Bovine viral diarrhea virus 1 strain USMARC-55924 polyprotein gene, complete cds | blastn | 30561 | 516 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 18866149 | 18866149 | PRJNA1069776_S_NODE_1255_length_609_cov_11.151943_g991_i0 | PRJNA1069776 | 1255 | 609 | 11.151943 | 67.91533287 | Pestivirus | 11095 | Viruses | Viruses | 1037 | 0 | NTclustered | gi|2731951075|gb|PP770551.1| | 11099 | g991 | i0 | 97.373 | 99.9770114942529 | 609 | 16 | 100 | 0 | 1 | 609 | 10450 | 11058 | Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome | blastn | 60886 | 1037 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 19310263 | 19310263 | PRJNA1069776_S_NODE_20556_length_232_cov_5.322751_g20242_i0 | PRJNA1069776 | 20556 | 232 | 5.322751 | 12.34878232 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 429 | 8.2e-116 | NTclustered | gi|2499447400|emb|OX492971.1| | 2697049 | g20242 | i0 | 100 | 100 | 232 | 0 | 100 | 0 | 1 | 232 | 26613 | 26382 | Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite | blastn | 23200 | 429 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 19310369 | 19310369 | PRJNA1069776_S_NODE_27716_length_204_cov_2.913043_g27402_i0 | PRJNA1069776 | 27716 | 204 | 2.913043 | 5.94260772 | Pestivirus bovis | 3052619 | Viruses | Viruses | 259 | 9.77e-65 | NTclustered | gi|642598|gb|L35851.1|BVDP125D | 11099 | g27402 | i0 | 89.655 | 10.3627450980392 | 203 | 21 | 99 | 0 | 2 | 204 | 592 | 390 | Bovine viral diarrhea virus (strain Oregon) p125 gene, partial cds | blastn | 2114 | 259 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 19310753 | 19310753 | PRJNA1069776_S_NODE_8956_length_318_cov_3.690909_g8642_i0 | PRJNA1069776 | 8956 | 318 | 3.690909 | 11.73709062 | Pestivirus bovis | 3052619 | Viruses | Viruses | 527 | 4.06e-145 | NTclustered | gi|1540352923|gb|MH231153.1| | 11099 | g8642 | i0 | 96.541 | 99.8207547169811 | 318 | 11 | 100 | 0 | 1 | 318 | 3981 | 4298 | Bovine viral diarrhea virus 1 isolate Nebraska polyprotein gene, complete cds | blastn | 31743 | 527 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 20141020 | 20141020 | PRJNA1069776_S_NODE_15656_length_260_cov_4.447005_g15342_i0 | PRJNA1069776 | 15656 | 260 | 4.447005 | 11.562213 | Pestivirus | 11095 | Viruses | Viruses | 429 | 9.37e-116 | NTclustered | gi|642598|gb|L35851.1|BVDP125D | 11099 | g15342 | i0 | 96.525 | 101.326923076923 | 259 | 9 | 99 | 0 | 2 | 260 | 2232 | 2490 | Bovine viral diarrhea virus (strain Oregon) p125 gene, partial cds | blastn | 26345 | 429 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 20585568 | 20585568 | PRJNA1069776_S_NODE_13557_length_275_cov_6.073276_g13243_i0 | PRJNA1069776 | 13557 | 275 | 6.073276 | 16.701509 | Pestivirus bovis | 3052619 | Viruses | Viruses | 472 | 1.64e-128 | NTclustered | gi|2858850717|gb|PQ613792.1| | 11099 | g13243 | i0 | 97.81 | 99.6036363636364 | 274 | 5 | 99 | 1 | 2 | 275 | 5454 | 5182 | Bovine viral diarrhea virus 1 isolate USMARC/PI-91-21/MDBK polyprotein gene, complete cds | blastn | 27391 | 472 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 20585650 | 20585650 | PRJNA1069776_S_NODE_1877_length_512_cov_13.582090_g1577_i0 | PRJNA1069776 | 1877 | 512 | 13.582090000000001 | 69.5403008 | Pestivirus bovis | 3052619 | Viruses | Viruses | 761 | 0 | NTclustered | gi|2666910701|gb|PP213451.1| | 981676 | g1577 | i0 | 93.542 | 99.55859375 | 511 | 33 | 99 | 0 | 1 | 511 | 10097 | 9587 | Bovine viral diarrhea virus 1b strain BJ-11, complete genome | blastn | 50974 | 761 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 20585683 | 20585683 | PRJNA1069776_S_NODE_20617_length_232_cov_3.502646_g20303_i0 | PRJNA1069776 | 20617 | 232 | 3.502646 | 8.12613872 | Betacoronavirus pandemicum | 3418604 | Viruses | Viruses | 429 | 8.2e-116 | NTclustered | gi|1854182511|gb|MT605815.1| | 2697049 | g20303 | i0 | 100 | 100 | 232 | 0 | 100 | 0 | 1 | 232 | 23218 | 23449 | Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-S112/2020, complete genome | blastn | 23200 | 429 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Nidovirales | Coronaviridae | Betacoronavirus | Betacoronavirus pandemicum | ||
| 20585707 | 20585707 | PRJNA1069776_S_NODE_22517_length_223_cov_4.405556_g22203_i0 | PRJNA1069776 | 22517 | 223 | 4.405556 | 9.82438988 | Pestivirus bovis | 3052619 | Viruses | Viruses | 337 | 4.88e-88 | NTclustered | gi|1771880388|emb|LR699803.1| | 11099 | g22203 | i0 | 94.118 | 47.3766816143498 | 221 | 13 | 99 | 0 | 3 | 223 | 1778 | 1558 | bovine viral diarrhea virus polyprotein gene for polyprotein, Npro, C, E1, E2, p7, NS2, NS3, NS4A, NS4B, NS5A, NS5B region | blastn | 10565 | 337 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 20585714 | 20585714 | PRJNA1069776_S_NODE_23057_length_221_cov_3.252809_g22743_i0 | PRJNA1069776 | 23057 | 221 | 3.252809 | 7.18870789 | Porcine bastrovirus | 2588662 | Viruses | Viruses | 54.7 | 0.005 | NTclustered | gi|1682068313|gb|MK387176.1| | 2588662 | g22743 | i0 | 100 | 0.257918552036199 | 29 | 0 | 13 | 0 | 1 | 29 | 13 | 41 | Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome | blastn | 57 | 54.7 | 1 | Viruses | Orthornavirae | Pisuviricota | Stelpaviricetes | Stellavirales | Astroviridae | Porcine bastrovirus | |||
| 21416833 | 21416833 | PRJNA1069776_S_NODE_5597_length_362_cov_18.153605_g5283_i0 | PRJNA1069776 | 5597 | 362 | 18.153605 | 65.7160501 | Pestivirus | 11095 | Viruses | Viruses | 592 | 1.6399999999999999e-164 | NTclustered | gi|2731951075|gb|PP770551.1| | 11099 | g5283 | i0 | 96.133 | 99.6850828729282 | 362 | 14 | 100 | 0 | 1 | 362 | 8333 | 7972 | Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome | blastn | 36086 | 592 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 21416836 | 21416836 | PRJNA1069776_S_NODE_6137_length_353_cov_40.441935_g5823_i0 | PRJNA1069776 | 6137 | 353 | 40.441935 | 142.76003055 | Pestivirus | 11095 | Viruses | Viruses | 619 | 7.299999999999999e-173 | NTclustered | gi|2618371112|gb|OR753412.1| | 11099 | g5823 | i0 | 98.3 | 94.2266288951841 | 353 | 6 | 100 | 0 | 1 | 353 | 388 | 36 | Bovine viral diarrhea virus 1 isolate BI-2023, complete genome | blastn | 33262 | 619 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 21861533 | 21861533 | PRJNA1069776_S_NODE_23598_length_219_cov_2.937500_g23284_i0 | PRJNA1069776 | 23598 | 219 | 2.9375 | 6.433125 | Jujube closterovirus 1 | 3043313 | Viruses | Viruses | 56.5 | 0.001 | NTclustered | gi|2496749738|gb|OP673405.1| | 3043313 | g23284 | i0 | 100 | 0.136986301369863 | 30 | 0 | 14 | 0 | 1 | 30 | 8 | 37 | Jujube closterovirus 1 isolate AKS15-20, complete genome | blastn | 30 | 56.5 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Alsuviricetes | Martellivirales | Closteroviridae | Jujube closterovirus 1 | |||
| 21861711 | 21861711 | PRJNA1069776_S_NODE_37438_length_178_cov_3.555556_g37124_i0 | PRJNA1069776 | 37438 | 178 | 3.555556 | 6.32888968 | Carlavirus latensdianthi | 3427766 | Viruses | Viruses | 54.7 | 0.004 | NTclustered | gi|1995060321|gb|MN450069.1| | 12164 | g37124 | i0 | 100 | 0.792134831460674 | 29 | 0 | 16 | 0 | 1 | 29 | 13 | 41 | Carnation latent virus isolate KL, complete genome | blastn | 141 | 54.7 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Alsuviricetes | Tymovirales | Betaflexiviridae | Carlavirus | Carlavirus latensdianthi | ||
| 22691653 | 22691653 | PRJNA1069776_S_NODE_8738_length_320_cov_5.480144_g8424_i0 | PRJNA1069776 | 8738 | 320 | 5.480144 | 17.5364608 | Pestivirus | 11095 | Viruses | Viruses | 486 | 6.939999999999998e-133 | NTclustered | gi|3786377|gb|AF039172.1|AF039172 | 11096 | g8424 | i0 | 97.872 | 85.23125 | 282 | 5 | 88 | 1 | 39 | 320 | 76 | 356 | Pestivirus type 2 strain BVDV23025 5' untranslated region | blastn | 27274 | 490 | 0.991836734693878 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus suis | ||
| 23136849 | 23136849 | PRJNA1069776_S_NODE_12279_length_286_cov_3.032922_g11965_i0 | PRJNA1069776 | 12279 | 286 | 3.032922 | 8.67415692 | Carlavirus latensdianthi | 3427766 | Viruses | Viruses | 58.4 | 5.68e-4 | NTclustered | gi|1995060321|gb|MN450069.1| | 12164 | g11965 | i0 | 100 | 0.108391608391608 | 31 | 0 | 11 | 0 | 1 | 31 | 15 | 45 | Carnation latent virus isolate KL, complete genome | blastn | 31 | 58.4 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Alsuviricetes | Tymovirales | Betaflexiviridae | Carlavirus | Carlavirus latensdianthi | ||
| 23136854 | 23136854 | PRJNA1069776_S_NODE_12519_length_283_cov_9.962500_g12205_i0 | PRJNA1069776 | 12519 | 283 | 9.9625 | 28.193875 | Pestivirus bovis | 3052619 | Viruses | Viruses | 411 | 3.739999999999999e-110 | NTclustered | gi|2731951075|gb|PP770551.1| | 11099 | g12205 | i0 | 98.291 | 96.8268551236749 | 234 | 4 | 100 | 0 | 1 | 234 | 10379 | 10146 | Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome | blastn | 27402 | 411 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 23136881 | 23136881 | PRJNA1069776_S_NODE_1399_length_579_cov_14.061567_g1120_i0 | PRJNA1069776 | 1399 | 579 | 14.061567 | 81.41647293 | Pestivirus bovis | 3052619 | Viruses | Viruses | 900 | 0 | NTclustered | gi|378753668|gb|JN380088.1| | 981676 | g1120 | i0 | 95.398 | 97.8721934369603 | 565 | 26 | 98 | 0 | 15 | 579 | 9768 | 9204 | Bovine viral diarrhea virus type 1b strain PJ polyprotein gene, complete cds | blastn | 56668 | 900 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 23137200 | 23137200 | PRJNA1069776_S_NODE_37939_length_177_cov_3.291045_g37625_i0 | PRJNA1069776 | 37939 | 177 | 3.291045 | 5.82514965 | Pestivirus bovis | 3052619 | Viruses | Viruses | 278 | 2.27e-70 | NTclustered | gi|2127986428|gb|MW732738.1| | 11099 | g37625 | i0 | 94.915 | 99.9491525423729 | 177 | 9 | 100 | 0 | 1 | 177 | 10939 | 10763 | Bovine viral diarrhea virus 1 strain PI407, complete genome | blastn | 17691 | 278 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 23137398 | 23137398 | PRJNA1069776_S_NODE_6419_length_349_cov_6.542484_g6105_i0 | PRJNA1069776 | 6419 | 349 | 6.542484 | 22.83326916 | Pestivirus tauri | 3052626 | Viruses | Viruses | 640 | 5.529999999999999e-179 | NTclustered | gi|1540352867|gb|MH231125.1| | 54315 | g6105 | i0 | 99.713 | 99.8252148997135 | 349 | 1 | 100 | 0 | 1 | 349 | 4907 | 4559 | Bovine viral diarrhea virus 2 isolate 2139 polyprotein gene, complete cds | blastn | 34839 | 640 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 23966977 | 23966977 | PRJNA1069776_S_NODE_1539_length_558_cov_14.708738_g1252_i0 | PRJNA1069776 | 1539 | 558 | 14.708738 | 82.07475804 | Pestivirus | 11095 | Viruses | Viruses | 830 | 0 | NTclustered | gi|2731951075|gb|PP770551.1| | 11099 | g1252 | i0 | 96.071 | 97.3494623655914 | 509 | 20 | 100 | 0 | 1 | 509 | 10654 | 10146 | Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome | blastn | 54321 | 830 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 23966980 | 23966980 | PRJNA1069776_S_NODE_1599_length_549_cov_78.237154_g1309_i0 | PRJNA1069776 | 1599 | 549 | 78.237154 | 429.52197546 | Pestivirus | 11095 | Viruses | Viruses | 926 | 0 | NTclustered | gi|530291193|gb|KC963967.1| | 11099 | g1309 | i0 | 97.086 | 100.897996357013 | 549 | 16 | 100 | 0 | 1 | 549 | 481 | 1029 | Bovine viral diarrhea virus 1 isolate 12F004, complete genome | blastn | 55393 | 926 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 24410391 | 24410391 | PRJNA1069776_S_NODE_10840_length_299_cov_2.621094_g10526_i0 | PRJNA1069776 | 10840 | 299 | 2.621094 | 7.83707106 | Pestivirus tauri | 3052626 | Viruses | Viruses | 525 | 1.3599999999999994e-144 | NTclustered | gi|1540352891|gb|MH231137.1| | 54315 | g10526 | i0 | 98.328 | 99.4280936454849 | 299 | 5 | 100 | 0 | 1 | 299 | 3167 | 3465 | Bovine viral diarrhea virus 2 isolate MadSpl polyprotein gene, complete cds | blastn | 29729 | 525 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 24410420 | 24410420 | PRJNA1069776_S_NODE_12560_length_283_cov_4.433333_g12246_i0 | PRJNA1069776 | 12560 | 283 | 4.433333 | 12.54633239 | Pestivirus tauri | 3052626 | Viruses | Viruses | 468 | 2.19e-127 | NTclustered | gi|1751376243|gb|MK599227.1| | 54315 | g12246 | i0 | 96.466 | 98.0600706713781 | 283 | 10 | 100 | 0 | 1 | 283 | 786 | 504 | Bovine viral diarrhea virus 2 strain SD-1 polyprotein gene, complete cds | blastn | 27751 | 468 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 24410530 | 24410530 | PRJNA1069776_S_NODE_20080_length_235_cov_2.109375_g19766_i0 | PRJNA1069776 | 20080 | 235 | 2.109375 | 4.95703125 | Carlavirus latensdianthi | 3427766 | Viruses | Viruses | 56.5 | 0.002 | NTclustered | gi|1995060321|gb|MN450069.1| | 12164 | g19766 | i0 | 97.059 | 0.621276595744681 | 34 | 0 | 14 | 1 | 202 | 235 | 45 | 13 | Carnation latent virus isolate KL, complete genome | blastn | 146 | 56.5 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Alsuviricetes | Tymovirales | Betaflexiviridae | Carlavirus | Carlavirus latensdianthi |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;