RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1069776" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA1069776 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6562617 6562617 PRJNA1069776_S_NODE_24106_length_217_cov_3.028736_g23792_i0 PRJNA1069776 24106 217 3.028736 6.57235712 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 379 7.739999999999998e-101   NTclustered gi|922689899|gb|CP012410.1| 712357 g23792 i0 98.157 478.405529953917 217 4 100 0 1 217 52261 52477 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 103814 379 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
14213431 14213431 PRJNA1069776_S_NODE_29612_length_198_cov_2.664516_g29298_i0 PRJNA1069776 29612 198 2.664516 5.27574168 Leptotrichia wadei 157687 Bacteria Bacteria 361 2.51e-95   NTclustered gi|1708575239|dbj|AP019834.1| 157687 g29298 i0 99.495 354.686868686869 198 1 100 0 1 198 222404 222207 Leptotrichia wadei JMUB3933 DNA, complete genome blastn 70228 361 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
27667753 27667753 PRJNA1069776_S_NODE_19684_length_237_cov_2.721649_g19370_i0 PRJNA1069776 19684 237 2.721649 6.45030813 unclassified Fusobacterium 2648384 Bacteria Bacteria 145 1.6599999999999999e-40   NR WP_211491421.1 2648384 g19370 i0 100 0.987341772151899 78 0 98.7 0 235 2 62 139 WP_211491421.1 MULTISPECIES: LacI family DNA-binding transcriptional regulator [unclassified Fusobacterium] diamond 234 145 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;