RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1068830", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA1068830 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4010259 4010259 PRJNA1068830_P_NODE_83324_length_245_cov_1.494186_g82621_i0 PRJNA1068830 83324 245 1.494186 3.6607557 Mesomycoplasma hyorhinis 2100 Bacteria Bacteria 435 1.88e-117   NTclustered gi|304308996|gb|CP002170.1| 872331 g82621 i0 98.394 101.632653061224 249 0 100 1 1 245 19070 18822 Mycoplasma hyorhinis HUB-1, complete genome blastn 24900 435 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
30604367 30604367 PRJNA1068830_P_NODE_51993_length_303_cov_1.439130_g51290_i0 PRJNA1068830 51993 303 1.43913 4.3605639 Mycoplasma sp. CAG:472 1262904 Bacteria Bacteria 68.6 1.36e-11   NR CDE37919.1 1262904 g51290 i0 42.3 1.02970297029703 104 48 92.1 4 298 20 101 203 CDE37919.1 ribulose-phosphate 3-epimerase [Mycoplasma sp. CAG:472] diamond 312 68.6 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. CAG:472
30762528 30762528 PRJNA1068830_P_NODE_75554_length_251_cov_0.876404_g74851_i0 PRJNA1068830 75554 251 0.876404 2.19977404 Candidatus Pelethenecus sp. 3022886 Bacteria Bacteria 114 3.98e-29   NR HRF69996.1 3022886 g74851 i0 69.1 0.968127490039841 81 23 94.4 1 251 15 174 254 HRF69996.1 hypothetical protein [Candidatus Pelethenecus sp.] diamond 243 114 1 Bacteria   Bacillati Mycoplasmatota Mollicutes     Candidatus Pelethenecus Candidatus Pelethenecus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;