RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1068830", tax_clade = "Sar" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1068830 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24409624 24409624 PRJNA1068830_P_NODE_79360_length_248_cov_0.891429_g78657_i0 PRJNA1068830 79360 248 0.891429 2.21074392 Perkinsus chesapeaki 330153 SAR_Eukaryotes SAR_Eukaryotes 122 1.5999999999999998e-32   NR KAF4677911.1 330153 g78657 i0 74.4 3.90725806451613 82 21 99.2 0 247 2 94 175 KAF4677911.1 60S ribosomal protein L19 [Perkinsus chesapeaki] diamond 969 122 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus chesapeaki
28457042 28457042 PRJNA1068830_P_NODE_22866_length_493_cov_1.871429_g22165_i0 PRJNA1068830 22866 493 1.871429 9.22614497 Perkinsus chesapeaki 330153 SAR_Eukaryotes SAR_Eukaryotes 53.5 8.38e-5   NR KAF4672759.1 330153 g22165 i0 47.8 0.279918864097363 46 24 28 0 164 301 260 305 KAF4672759.1 hypothetical protein FOL47_000163 [Perkinsus chesapeaki] diamond 138 53.5 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus chesapeaki
30975286 30975286 PRJNA1068830_P_NODE_87134_length_243_cov_0.917647_g86431_i0 PRJNA1068830 87134 243 0.917647 2.22988221 root 1 Root_unresolved Root_unresolved 130 9.329999999999999e-35   NR XP_002784853.1 423536 g86431 i0 70.4 7.96296296296296 81 24 100 0 1 243 212 292 XP_002784853.1 NAD dependent epimerase/dehydratase, putative [Perkinsus marinus ATCC 50983] diamond 1935 130 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;