RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1068830", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1068830 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1014307 1014307 PRJNA1068830_P_NODE_69981_length_257_cov_2.445652_g69278_i0 PRJNA1068830 69981 257 2.445652 6.28532564 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 470 5.45e-128   NTclustered gi|38640506|gb|AF411284.1| 188964 g69278 i0 99.611 99.4630350194552 257 1 100 0 1 257 1008 752 Gymnophrys cometa 18S ribosomal RNA gene, complete sequence blastn 25562 470 1 Eukaryota Sar   Cercozoa       Gymnophrys Gymnophrys cometa
2732870 2732870 PRJNA1068830_P_NODE_22563_length_497_cov_1.851415_g21862_i0 PRJNA1068830 22563 497 1.851415 9.20153255 Gymnophrys sp. ATCC 50923 646463 SAR_Eukaryotes SAR_Eukaryotes 784 0   NTclustered gi|238617604|gb|FJ973379.1| 646463 g21862 i0 99.307 87.8350100603622 433 3 87 0 1 433 2029 1597 Gymnophrys sp. ATCC 50923 28S ribosomal RNA gene, partial sequence blastn 43654 784 1 Eukaryota Sar   Cercozoa       Gymnophrys Gymnophrys sp. ATCC 50923
16759673 16759673 PRJNA1068830_P_NODE_43974_length_333_cov_1.796154_g43271_i0 PRJNA1068830 43974 333 1.796154 5.98119282 Gymnophrys sp. ATCC 50923 646463 SAR_Eukaryotes SAR_Eukaryotes 616 8.87e-172   NTclustered gi|238617604|gb|FJ973379.1| 646463 g43271 i0 100 23.6936936936937 333 0 100 0 1 333 351 683 Gymnophrys sp. ATCC 50923 28S ribosomal RNA gene, partial sequence blastn 7890 616 1 Eukaryota Sar   Cercozoa       Gymnophrys Gymnophrys sp. ATCC 50923
31932163 31932163 PRJNA1068830_P_NODE_88337_length_242_cov_0.923077_g87634_i0 PRJNA1068830 88337 242 0.923077 2.23384634 Lotharella oceanica 641309 SAR_Eukaryotes SAR_Eukaryotes 65.1 5.26e-12   NR AIB09582.1 641309 g87634 i0 53.7 0.669421487603306 54 25 66.9 0 185 24 1 54 AIB09582.1 hypothetical protein M951_chr1100 [Lotharella oceanica] diamond 162 65.1 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Lotharella Lotharella oceanica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;