RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1068830", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA1068830 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19309263 19309263 PRJNA1068830_P_NODE_78316_length_249_cov_0.886364_g77613_i0 PRJNA1068830 78316 249 0.886364 2.20704636 root 1 Root_unresolved Root_unresolved 110 4.36e-26   NR MBO7731199.1 66852 g77613 i0 66.3 10 83 28 100 0 1 249 251 333 MBO7731199.1 hypothetical protein [Methanobrevibacter sp.] diamond 2490 110 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
30604386 30604386 PRJNA1068830_P_NODE_75513_length_251_cov_0.876404_g74810_i0 PRJNA1068830 75513 251 0.876404 2.19977404 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 40 0.0417   NR WP_295622269.1 253161 g74810 i0 46.3 0.49003984063745 41 22 49 0 19 141 7 47 WP_295622269.1 hypothetical protein [uncultured Methanobrevibacter sp.] diamond 123 40 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
30848783 30848783 PRJNA1068830_P_NODE_62574_length_275_cov_0.975248_g61871_i0 PRJNA1068830 62574 275 0.975248 2.681932 root 1 Root_unresolved Root_unresolved 121 8.89e-31   NR WP_295591711.1 66852 g61871 i0 63.7 4.97454545454545 91 30 99.3 1 275 3 18 105 WP_295591711.1 ATP-binding protein [Methanobrevibacter sp.] diamond 1368 121 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;