RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1068830", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 8 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 8 ✖

bioproject 1

  • PRJNA1068830 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9110776 9110776 PRJNA1068830_P_NODE_60168_length_280_cov_2.212560_g59465_i0 PRJNA1068830 60168 280 2.21256 6.195168 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 374 4.849999999999998e-99   NTclustered gi|575456455|gb|CP007128.1| 861299 g59465 i0 90.845 112.260714285714 284 18 100 6 1 280 3042596 3042317 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 31433 374 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
11661753 11661753 PRJNA1068830_P_NODE_59150_length_283_cov_1.390476_g58447_i0 PRJNA1068830 59150 283 1.390476 3.93504708 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 204 6.809999999999998e-48   NTclustered gi|2874253789|emb|OY969773.1| 412054 g58447 i0 85.096 29.4840989399293 208 21 73 9 37 242 954188 953989 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 8344 204 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
15486266 15486266 PRJNA1068830_P_NODE_74753_length_251_cov_1.775281_g74050_i0 PRJNA1068830 74753 251 1.775281 4.45595531 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 294 3.4200000000000003e-75   NTclustered gi|2874253789|emb|OY969773.1| 412054 g74050 i0 89.54 0.952191235059761 239 15 95 7 1 239 673526 673298 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 239 294 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
26750439 26750439 PRJNA1068830_P_NODE_85461_length_244_cov_0.912281_g84758_i0 PRJNA1068830 85461 244 0.912281 2.22596564 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 57 1.78e-7   NR MFB3112079.1 2448054 g84758 i0 50.8 3.20901639344262 63 29 77.5 1 51 239 128 188 MFB3112079.1 CAP domain-containing protein [Gemmatimonadales bacterium] diamond 783 57 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27003909 27003909 PRJNA1068830_P_NODE_60722_length_279_cov_1.514563_g60019_i0 PRJNA1068830 60722 279 1.514563 4.22563077 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 52.4 2.36e-5   NR HEV8362459.1 2026741 g60019 i0 45.2 1 93 48 100 2 1 279 156 245 HEV8362459.1 glycosyltransferase family 39 protein [Gemmatimonadaceae bacterium] diamond 279 52.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27415276 27415276 PRJNA1068830_P_NODE_83363_length_245_cov_1.360465_g82660_i0 PRJNA1068830 83363 245 1.360465 3.33313925 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 50.8 3.62e-5   NR NNE08328.1 2026742 g82660 i0 36.3 0.979591836734694 80 37 98 2 242 3 45 110 NNE08328.1 iron-sulfur cluster repair di-iron protein [Gemmatimonadota bacterium] diamond 240 50.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29435446 29435446 PRJNA1068830_P_NODE_90770_length_227_cov_2.331169_g90067_i0 PRJNA1068830 90770 227 2.331169 5.29175363 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 50.4 5.83e-5   NR HEV7993743.1 2026741 g90067 i0 37.9 1.71806167400881 66 40 87.2 1 24 221 554 618 HEV7993743.1 serine/threonine-protein kinase [Gemmatimonadaceae bacterium] diamond 390 50.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29877908 29877908 PRJNA1068830_P_NODE_63691_length_272_cov_1.306533_g62988_i0 PRJNA1068830 63691 272 1.306533 3.5537697600000002 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 82.8 4.18e-16   NR HEY6061030.1 2448054 g62988 i0 47.2 2.94485294117647 89 43 98.2 1 270 4 296 380 HEY6061030.1 Ig-like domain-containing protein [Gemmatimonadales bacterium] diamond 801 82.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;