RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1068513" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1068513 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29901046 29901046 PRJNA1068513_S_NODE_9811_length_286_cov_2.366197_g9765_i0 PRJNA1068513 9811 286 2.366197 6.76732342 Desulfobacula 28222 Bacteria Bacteria 44.3 0.0158   NR OGR21141.1 1797911 g9765 i0 66.7 1.16433566433566 27 9 28.3 0 283 203 239 265 OGR21141.1 MAG: spermidine synthase [Desulfobacula sp. RIFOXYA12_FULL_46_16] diamond 333 44.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacula Desulfobacula sp. RIFOXYA12_FULL_46_16
31015158 31015158 PRJNA1068513_S_NODE_8015_length_320_cov_3.923077_g7969_i0 PRJNA1068513 8015 320 3.923077 12.5538464 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 42.7 0.0474   NR MCD4744322.1 2049433 g7969 i0 30.6 0.675 72 46 67.5 1 295 80 68 135 MCD4744322.1 hypothetical protein [Desulfobacteraceae bacterium] diamond 216 42.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
32185459 32185459 PRJNA1068513_S_NODE_10478_length_276_cov_1.133005_g10432_i0 PRJNA1068513 10478 276 1.133005 3.1270938 Desulfovermiculus sp. 2821143 Bacteria Bacteria 61.6 4.48e-9   NR MFP4429435.1 2821143 g10432 i0 37.8 0.891304347826087 82 49 88 2 34 276 5 85 MFP4429435.1 class I SAM-dependent DNA methyltransferase [Desulfovermiculus sp.] diamond 246 61.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfohalobiaceae Desulfovermiculus Desulfovermiculus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;