RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1068513" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1068513 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28330525 28330525 PRJNA1068513_S_NODE_13326_length_242_cov_1.284024_g13280_i0 PRJNA1068513 13326 242 1.284024 3.10733808 Anaerolineae bacterium 2052143 Bacteria Bacteria 43.9 0.0062   NR NSW52057.1 2052143 g13280 i0 55 0.495867768595041 40 18 49.6 0 3 122 102 141 NSW52057.1 MaoC family dehydratase [Anaerolineae bacterium] diamond 120 43.9 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
30121932 30121932 PRJNA1068513_S_NODE_11612_length_258_cov_3.027027_g11566_i0 PRJNA1068513 11612 258 3.027027 7.80972966 Bacteria 2 Bacteria Bacteria 82 6.04e-16   NR MBU2534615.1 2026724 g11566 i0 61.5 6.80232558139535 65 25 75.6 0 195 1 337 401 MBU2534615.1 serpin family protein [Chloroflexota bacterium] diamond 1755 82 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
30952141 30952141 PRJNA1068513_S_NODE_12374_length_250_cov_1.463277_g12328_i0 PRJNA1068513 12374 250 1.463277 3.6581925 Phototrophicus methaneseepsis 2710758 Bacteria Bacteria 64.3 1e-9   NR WP_195170449.1 2710758 g12328 i0 43.3 0.72 60 34 72 0 235 56 409 468 WP_195170449.1 FAD-dependent oxidoreductase [Phototrophicus methaneseepsis] diamond 180 64.3 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae Phototrophicus Phototrophicus methaneseepsis
32312241 32312241 PRJNA1068513_S_NODE_3139_length_490_cov_3.333333_g3094_i0 PRJNA1068513 3139 490 3.333333 16.3333317 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 51.6 2.62e-4   NR MCH2522493.1 2026734 g3094 i0 38.1 0.514285714285714 84 50 51.4 1 13 264 186 267 MCH2522493.1 MBL fold metallo-hydrolase [Dehalococcoidia bacterium] diamond 252 51.6 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;