RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1068513", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 6 ✖

tax_phylum 1

  • Bdellovibrionota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1068513 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4841649 4841649 PRJNA1068513_S_NODE_2784_length_511_cov_2.794521_g2740_i0 PRJNA1068513 2784 511 2.794521 14.28000231 Pseudobdellovibrio 2862745 Bacteria Bacteria 601 3.96e-167   NTclustered gi|507148233|ref|NR_103040.1| 453816 g2740 i0 90.57 111.405088062622 456 39 89 4 41 494 44 497 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 56928 601 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
11660458 11660458 PRJNA1068513_S_NODE_12550_length_249_cov_0.886364_g12504_i0 PRJNA1068513 12550 249 0.886364 2.20704636 Pseudobdellovibrio sp. 2862747 Bacteria Bacteria 150 4.71e-44   NR MFN3454084.1 2862747 g12504 i0 90.2 1.97590361445783 82 8 98.8 0 248 3 27 108 MFN3454084.1 Tex-like N-terminal domain-containing protein [Pseudobdellovibrio sp.] diamond 492 150 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp.
18033615 18033615 PRJNA1068513_S_NODE_5355_length_393_cov_1.428125_g5309_i0 PRJNA1068513 5355 393 1.428125 5.61253125 Pseudobdellovibrio sp. HCB154 3386277 Bacteria Bacteria 252 3.45e-62   NTclustered gi|2872995934|gb|CP176530.1| 3386277 g5309 i0 78.796 3.06870229007634 382 76 96 4 16 393 2536614 2536234 Pseudobdellovibrio sp. HCB154 chromosome, complete genome blastn 1206 252 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154
27596138 27596138 PRJNA1068513_S_NODE_5204_length_398_cov_3.433846_g5159_i0 PRJNA1068513 5204 398 3.433846 13.66670708 Bdellovibrio 958 Bacteria Bacteria 156 4.49e-45   NR MBO9668790.1 28201 g5159 i0 70.1 12.7311557788945 107 32 80.7 0 3 323 127 233 MBO9668790.1 PLP-dependent transferase [Bdellovibrio sp.] diamond 5067 157 0.993630573248408 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
29972515 29972515 PRJNA1068513_S_NODE_9871_length_285_cov_2.080189_g9825_i0 PRJNA1068513 9871 285 2.080189 5.92853865 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 52 1.98e-5   NR MDA8792049.1 2081706 g9825 i0 34.1 0.957894736842105 91 52 92.6 3 266 3 124 209 MDA8792049.1 trypsin-like serine protease [Bacteriovoracaceae bacterium] diamond 273 52 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
31615919 31615919 PRJNA1068513_S_NODE_5996_length_372_cov_2.652174_g5950_i0 PRJNA1068513 5996 372 2.652174 9.86608728 Bacteriovorax sp. DB6_IX 1353530 Bacteria Bacteria 44.7 0.0277   NR WP_021278921.1 1353530 g5950 i0 35.3 0.685483870967742 85 43 68.5 3 321 67 210 282 WP_021278921.1 proline iminopeptidase-family hydrolase [Bacteriovorax sp. DB6_IX] diamond 255 44.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. DB6_IX

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;