RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1068513" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA1068513 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21858618 21858618 PRJNA1068513_S_NODE_10498_length_275_cov_2.737624_g10452_i0 PRJNA1068513 10498 275 2.737624 7.528466 Lentivirus pum 3418653 Viruses Viruses 62.1 4.2e-5   NTclustered gi|1817429831|gb|MN531141.1| 12804 g10452 i0 97.222 12.8072727272727 36 1 13 0 239 274 3621 3656 Puma lentivirus isolate x1432, partial genome blastn 3522 62.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus pum
26972309 26972309 PRJNA1068513_S_NODE_82_length_1327_cov_45.779904_g70_i0 PRJNA1068513 82 1327 45.779904 607.49932608 Human immunodeficiency virus 1 11676 Viruses Viruses 44.3 0.0306   NR ABO75472.1 11676 g70 i0 55.6 0.0610399397136398 27 12 6.1 0 649 569 9 35 ABO75472.1 gag protein, partial [Human immunodeficiency virus 1] diamond 81 44.3 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;